 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Peaxi162Scf00020g02337.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 231aa MW: 26482.1 Da PI: 10.1174 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peaxi162Scf00020g02337.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 92.9 | 1.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eys+
Peaxi162Scf00020g02337.1 9 KRIENKISRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTKGKLFEYST 59
79***********************************************96 PP
|
| 2 | K-box | 90.4 | 3.2e-30 | 77 | 166 | 3 | 92 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87
+++ +++++ e+++ e+ kL ++ie +qr++Rh++G+dL++Lsl+eLq+Leqq++++lk+iRs+Kn+l++e+i+el kk ke+
Peaxi162Scf00020g02337.1 77 ERKLNANDSDPKENWTLEYPKLMSRIELIQRNIRHYMGQDLDPLSLRELQSLEQQIDTALKRIRSRKNQLMHESISELHKKLKEN 161
5566667778899***********************************************************************9 PP
K-box 88 qeenk 92
++++
Peaxi162Scf00020g02337.1 162 EKTQS 166
98875 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 1.8E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 32.057 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 9.68E-34 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 8.42E-42 | 2 | 76 | No hit | No description |
| PRINTS | PR00404 | 1.8E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.8E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.8E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.5E-24 | 84 | 165 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.525 | 88 | 179 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MGRGRIQLKR IENKISRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFST KGKLFEYSTE 60
SSMESILERY ERYSYAERKL NANDSDPKEN WTLEYPKLMS RIELIQRNIR HYMGQDLDPL 120
SLRELQSLEQ QIDTALKRIR SRKNQLMHES ISELHKKLKE NEKTQSGQTQ PISSQNDATF 180
MVPQPPSLSH HVANLTIGGA FGAKTVTNTN GVQASNSQMP PWMIRHVNNE G
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF335245 | 0.0 | AF335245.1 Petunia x hybrida MADS-box transcription factor FBP29 (FBP29) mRNA, complete cds. |
