PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00019g00226.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 672aa    MW: 75558 Da    PI: 7.0534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00019g00226.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.7e-1112901498
                              T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                              +++++pk+f++++ ++ +++    l+ +sg++Wev++    + g+++l++GW++F +   +++g f++F +dg s+f  +v +f+
  Peaxi162Scf00019g00226.1 12 KIVRIPKNFTSRYCKNMQNP--AYLMVPSGEVWEVEV--VHSEGQIWLAEGWQDFTDYYSINSGYFLMFGYDGFSNF--NVIIFD 90
                              5689*********5554454..99*************..999999**************************987888..777776 PP
2B350.73.2e-16234314488
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                + ps+vl   +l+++ kfa+ + +k+ ++  l+l+ +   +W+vk+  r  +    + +GWk Fv +n+Lk gD++vF++++ +
  Peaxi162Scf00019g00226.1 234 FMQPSYVLPPFNLSISMKFARMYFLKN-CG-NLVLRVLGRGTWSVKC--RAAKADARIYSGWKAFVLDNKLKFGDVCVFEVMKGT 314
                               6789*******************8884.44.8***************..7777777799*********************76532 PP
3B342.11.5e-13488564486
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                + ps+vl+  +l+++ kfa+++ +++ ++ +l+l+ +   sW+vk+i+     +++    W+ Fv++n+Lk+gD++vF+++ 
  Peaxi162Scf00019g00226.1 488 FMQPSYVLSPFNLSVSLKFARKYVLEN-CG-DLVLRVPGKGSWSVKCIIGTENAKIF----WEAFVHDNKLKVGDVCVFEVIV 564
                               6889*******************8773.54.9***************7744444443....*******************763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.603192IPR003340B3 DNA binding domain
SMARTSM010197.3E-5892IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-151092IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-81489IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-151499IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-91590No hitNo description
Gene3DG3DSA:2.40.330.105.4E-21223322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-19224322IPR015300DNA-binding pseudobarrel domain
CDDcd100175.99E-19229323No hitNo description
PROSITE profilePS5086312.252231325IPR003340B3 DNA binding domain
SMARTSM010197.4E-12231325IPR003340B3 DNA binding domain
PfamPF023629.6E-14233314IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-17477574IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-15478575IPR015300DNA-binding pseudobarrel domain
CDDcd100179.27E-17483575No hitNo description
PROSITE profilePS508639.53485577IPR003340B3 DNA binding domain
SMARTSM010192.9E-12485577IPR003340B3 DNA binding domain
PfamPF023622.2E-11487563IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MEAQAHVYVE PKIVRIPKNF TSRYCKNMQN PAYLMVPSGE VWEVEVVHSE GQIWLAEGWQ  60
DFTDYYSINS GYFLMFGYDG FSNFNVIIFD LSASEIEYPY NAVHGTCHAP KINQIELDDS  120
IEILEDIPQS HRGAKVADII DLSAEKIGQC PLGQPSKRRR QEGDSEDDVS VDVQEVDSPF  180
STRKGQKTSD RCRKHTQNAK IGHDKNKAVM EKERSIAYQK AKAFESSNPF IISFMQPSYV  240
LPPFNLSISM KFARMYFLKN CGNLVLRVLG RGTWSVKCRA AKADARIYSG WKAFVLDNKL  300
KFGDVCVFEV MKGTKLIDVT IFPEAESTPM HKIVGEVPGI SDNSVPCPQS KTIHNKKLKQ  360
QRGNVYGFHS KIEEEYGEGT EIEHSDELLS HHPLGQGSKR KRLEGEADDD DVSIDICTKS  420
IKVQRSQEDV ASSSSTRKTK KSGESCQMHT QNSNISCNTN KPVMDKERAI VYQRAKAFKS  480
ENPFIISFMQ PSYVLSPFNL SVSLKFARKY VLENCGDLVL RVPGKGSWSV KCIIGTENAK  540
IFWEAFVHDN KLKVGDVCVF EVIVGTKLID VTIFPTAGNT PMHKTTEEVP WVSDLSVLWE  600
YGEGTDTEYL TKELDEGTGK NVQQSKSSRM GKVVAINMVI VYQNAKAFTS ENPFFICFMQ  660
PSYVSTASGI PI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613656.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1
TrEMBLA0A1S4BPE80.0A0A1S4BPE8_TOBAC; B3 domain-containing protein LOC_Os12g40080-like isoform X1
STRINGXP_009613656.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-36B3 family protein