PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00016g03256.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 182aa MW: 20073.6 Da PI: 5.0359 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.7 | 1.9e-20 | 19 | 62 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i+n nr+vtfskRr g++KKA+EL++L++ae+a+i+ s +g+ Peaxi162Scf00016g03256.1 19 PINNLNNRHVTFSKRRLGLFKKASELCILTGAEIAIIVQSLKGH 62 799************************************99886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-24 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.039 | 10 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-22 | 11 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-13 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.6E-19 | 20 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-13 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-13 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence Send to blast |
MNVNTAKKTQ GRRKIEIQPI NNLNNRHVTF SKRRLGLFKK ASELCILTGA EIAIIVQSLK 60 GHRIFAFGHP SVDVVIDCYV NGKSSSSEAD QLNNMQPPVD DMGIEQLEEF VSALEELKKN 120 VTMRADELSM INGSSMHASS PNSSVNIARF GIEDQYMNEA VDDCASIVPF DFDHQGGDDG 180 QS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC240204 | 1e-34 | AC240204.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence. | |||
GenBank | HG975440 | 1e-34 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 1e-34 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231377.1 | 3e-77 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | M1A2B3 | 4e-77 | M1A2B3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400013105 | 6e-78 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-30 | AGAMOUS-like 62 |