PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00016g02512.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HB-other
Protein Properties Length: 676aa    MW: 74452.6 Da    PI: 6.2397
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00016g02512.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.21.3e-135065511156
                               HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +++L e+F++n+yp+++++e L k+lgLt  qV+ WF N R   +
  Peaxi162Scf00016g02512.1 506 AIKRLYEYFKENQYPDRDAKENLGKELGLTAHQVSKWFENARFSSR 551
                               6899**************************************8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.77E-10224271IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.4E-8231272IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5007113.281493553IPR001356Homeobox domain
SMARTSM003891.3E-12496557IPR001356Homeobox domain
SuperFamilySSF466894.15E-12497558IPR009057Homeodomain-like
CDDcd000869.00E-12498554No hitNo description
Gene3DG3DSA:1.10.10.603.4E-13498547IPR009057Homeodomain-like
PfamPF000464.0E-11506551IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MSGNANQEEM RPQLEGRTEM SILGNTALSP EEVAATTAGA HNTASAVNMS ENPGVVEQSG  60
EACENAVLHL DQSESREKRP GQPRKRKSTS GTPISSTRLL RSQSKEKSGA SETNNTAVTH  120
DATEEKKRKR RKKKRSENVA VNEFTRIRSH LRYLLHRIQY EQTLIEAYSG EGWKGQSLEK  180
IKLEKELQRA NAHIFRYKLK IRDLFQRLDT LLAQGRLPAS LFDDEGEIDS EDIFCAKCGS  240
KELPADNDIV LCDGACERGF HQLCLEPPLL KDDSNFHLMM KAGFVLAVIA KLTALNLGEA  300
PSKDDDMMGL PSEDSEDDDF NPDDPDKDEP AKSESSSSDF TSDSEDLGLV VDTNRLSGDE  360
RGVSPSVDSS RPYSASQEEK SEVGIAKGNS LKGELAYLMQ SGVPLLSDKR HVERLDYKKL  420
NDETYGNVSS SDSSDEDYGD GPVPKARKIR SAKAAMPSPS LTPADIKCQS GMQKGSGRTS  480
DRGCREKLDT SEPHSSGKKK TKGEGAIKRL YEYFKENQYP DRDAKENLGK ELGLTAHQVS  540
KWFENARFSS RHSSRWDSIM SQKISKESPS SPQITAEPLG TESKSTMNDA SCNGVEKLEP  600
PNSLPNGEKC HAMEKSEGDL LTQEASGKKS RKSKAKSDTT DQVLDNTPSK KTPKKQDAQK  660
CKDRTSKEIG SSLNVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130KKRKRR
2125132KKRKRRKK
3126131KRKRRK
4126134KRKRRKKKR
5128134KRRKKKR
6129134RRKKKR
7129135RRKKKRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592467.10.0PREDICTED: pathogenesis-related homeodomain protein-like
RefseqXP_009592468.10.0PREDICTED: pathogenesis-related homeodomain protein-like
RefseqXP_016478781.10.0PREDICTED: pathogenesis-related homeodomain protein-like
RefseqXP_016478782.10.0PREDICTED: pathogenesis-related homeodomain protein-like
TrEMBLA0A1S4APU60.0A0A1S4APU6_TOBAC; pathogenesis-related homeodomain protein-like
STRINGXP_009592467.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.19e-61Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain