PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00016g01352.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 1681aa    MW: 190827 Da    PI: 9.291
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00016g01352.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.1e-131198598
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                        B3  5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                               + ++v   ++l+lp +f++ehg     + t++l  ++   W+v l  +k ++ ++l +GW+eF + + ++   f++F++  +s+f 
  Peaxi162Scf00016g01352.1 11 IIEPSVIDDRQLRLPDQFVQEHGDG--LQDTVRLIVPTDDFWNVGL--KKVGKLIWLHDGWQEFMEHHSIERYYFLTFEYGPNSCF- 92
                              5678999999************654..5669***************..999888**************************988***. PP

                              .EEEEE- CS
                        B3 92 lvvkvfr 98
                               +v++f+
  Peaxi162Scf00016g01352.1 93 -KVHIFD 98
                              .999987 PP
2B3345.4e-111832581798
                               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                               ++p +f++ehg +      ++l  ++ + W+v l  ++++++++l +GW+eF + + ++   f++Fk+ ++s+f  +v++f+
  Peaxi162Scf00016g01352.1 183 RMPDRFVQEHGDE--LLDAVRLIVPTDEFWSVGL--KRSGKMIWLHDGWQEFMEHHSIDCWYFLLFKYGQNSCF--NVHIFD 258
                               579*******865..6669***************..********************************999***..999997 PP
3B3551.5e-17409500195
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               f+k+l   +v + + l ++ +f++e++ k   s  + l+d +g++W++++   +++ +  l+kGW++Fv++  L +gD++vF+l+
  Peaxi162Scf00016g01352.1 409 FLKILAGYNVARGQFLNISAEFVREYMPK--ISNAIELQDCDGNKWTLRC--IRRKYQLCLSKGWSKFVRDTSLVAGDVCVFELI 489
                               6677777778888899**********844..7889***************..66667799***********************99 PP

                               SS.SEE..EEE CS
                        B3  86 gr.sefelvvk 95 
                                + ++ e v+k
  Peaxi162Scf00016g01352.1 490 TDiQTDEHVLK 500
                               77666555544 PP
4B367.12.5e-21824916196
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               f ++l+  ++ ++ +l +p +f +e++ k  +sk ++l++++g++W+v++i rk      l+kGW++Fv++n L++gD++vF+l+
  Peaxi162Scf00016g01352.1 824 FMQILVEYNAVRNYILNIPAEFSREYMPK--TSKFIKLQNSDGNKWNVRCIRRKD--LSSLSKGWRNFVRDNSLEVGDVCVFELI 904
                               667777788889999***********855..7789***************54444..456************************9 PP

                               SS.SEE..EEEE CS
                        B3  86 gr.sefelvvkv 96 
                               ++ ++ el++kv
  Peaxi162Scf00016g01352.1 905 KDlQTDELMLKV 916
                               988887777665 PP
5B334.15e-119239981798
                               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                               ++p +f++ehg +      ++l  ++ + W+v l  ++++++++l +GW+eF + + ++   f++Fk+ ++s+f  +v++f+
  Peaxi162Scf00016g01352.1 923 RMPDRFVQEHGDE--LLDAVRLIVPTDEFWSVGL--KRSGKMIWLHDGWQEFMEHHSIDCWYFLLFKYGQNSCF--NVHIFD 998
                               579*******865..6669***************..********************************999***..999997 PP
6B362.28.2e-2011491241196
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                        B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83  
                                f k+l+  +v +s  l ++  f++e++ k  +s  + l+d +g++W+v++   +++++++l+kGW++Fv++  L +gD++vF+
  Peaxi162Scf00016g01352.1 1149 FTKILVEYNVVRSYTLNISAGFVREYMPK--TSNVIELQDCDGNKWNVRC--IRRKDQIYLSKGWSNFVRDTSLVAGDVCVFE 1227
                                889999********************844..6779***************..899999************************* PP

                                E-SS.SEE..EEEE CS
                        B3   84 ldgr.sefelvvkv 96  
                                l+ + +++e ++kv
  Peaxi162Scf00016g01352.1 1228 LITDiQTAEHMLKV 1241
                                *9887877766665 PP
7B367.91.4e-2115711663196
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                        B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83  
                                f  vl + +v ++++l +p +fa+e+   +++s  + l+d +g++W+v++   +++++++l+kGW +Fv++n L+++D++vF+
  Peaxi162Scf00016g01352.1 1571 FTAVLANYNVVRHHILNIPTEFAREYI--PKTSNVIELQDCDGNKWNVRC--IRRKDQIYLGKGWLNFVRDNSLEVRDVCVFE 1649
                                6678888999****************5..336679***************..899999************************* PP

                                E-SS.SEE..EEEE CS
                        B3   84 ldgr.sefelvvkv 96  
                                ++++ +  el++kv
  Peaxi162Scf00016g01352.1 1650 FIKElQADELMLKV 1663
                                99877777666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.3E-18699IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-17699IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.9697100IPR003340B3 DNA binding domain
SMARTSM010191.1E-108100IPR003340B3 DNA binding domain
CDDcd100175.49E-141098No hitNo description
PfamPF023625.1E-101198IPR003340B3 DNA binding domain
SMARTSM010190.0012175260IPR003340B3 DNA binding domain
CDDcd100171.17E-10178258No hitNo description
PfamPF023622.2E-7183258IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-13183259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-13183259IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.742184260IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-26402506IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-24404505IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-22407504No hitNo description
SMARTSM010199.4E-19409507IPR003340B3 DNA binding domain
PfamPF023624.8E-15409500IPR003340B3 DNA binding domain
PROSITE profilePS5086314.466409507IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-26819921IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-27819921IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-26822920No hitNo description
SMARTSM010191.5E-16824911IPR003340B3 DNA binding domain
PfamPF023628.9E-19824916IPR003340B3 DNA binding domain
PROSITE profilePS5086316.779824922IPR003340B3 DNA binding domain
SMARTSM010190.00159131000IPR003340B3 DNA binding domain
CDDcd100175.25E-11913998No hitNo description
SuperFamilySSF1019369.22E-13919999IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-7923998IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-13923999IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.7429241000IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-2611421245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-2511441245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-2411471244No hitNo description
SMARTSM010191.2E-1611491247IPR003340B3 DNA binding domain
PfamPF023622.4E-1711491241IPR003340B3 DNA binding domain
PROSITE profilePS5086315.07211491247IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-2615651668IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-2615661668IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-2615691667No hitNo description
PROSITE profilePS5086315.69315711669IPR003340B3 DNA binding domain
SMARTSM010195.8E-1715711669IPR003340B3 DNA binding domain
PfamPF023623.0E-1915711667IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1681 aa     Download sequence    Send to blast
MELCSTSFYV IIEPSVIDDR QLRLPDQFVQ EHGDGLQDTV RLIVPTDDFW NVGLKKVGKL  60
IWLHDGWQEF MEHHSIERYY FLTFEYGPNS CFKVHIFDLT AAEIHYQLRS HGNVGHDDGE  120
SSVEIVDPWE TEQGRATKSS ELSRGAKKRK IAAESLTKPF MGKLLVQESM DTSVYFVVVA  180
GGRMPDRFVQ EHGDELLDAV RLIVPTDEFW SVGLKRSGKM IWLHDGWQEF MEHHSIDCWY  240
FLLFKYGQNS CFNVHIFDLT AAEIHYRLRS HGNAKLQDIS QDLSHGKEKV VGDNDSGSSV  300
EIVDPLKTEQ GPESSAKLSE LPHGAKRCKL APGKSKFWRC DETRSKENEL PVSSNRTNCK  360
TDTSKSFTGQ QLKKSVRCGR PHNRGRPGAA EANKAINAAK MFIPKNPYFL KILAGYNVAR  420
GQFLNISAEF VREYMPKISN AIELQDCDGN KWTLRCIRRK YQLCLSKGWS KFVRDTSLVA  480
GDVCVFELIT DIQTDEHVLK VHIFHSRVAE NSTNLHTCSI TEPTLSVCKN CILQFDESKD  540
TESSDAFGSL SSNRTNCKTD TGKSFTGQQM KKSVRRGRPP KRGRPLSAEE NRAIDAAKMC  600
MPKDPYFMQI HYRLRSHGNA RLHHISQDLS HGKKIGFDND GESSVEIVDL LETAQGPESS  660
AKTSELSHGP KKRKIAPGRS KFWHCYETRS KANILHDKRQ LLNAKNLNIV RDSSLTKPLM  720
GKLVQQNMNT SMYSAVVAGG VTNQDNAREG SKTDVLQFNE SKQTESSDAF GPVSSNRTHC  780
NGKSFTTQQL EKSVRPHKRG QPSIAEANRA KNAAKLFIPK NPYFMQILVE YNAVRNYILN  840
IPAEFSREYM PKTSKFIKLQ NSDGNKWNVR CIRRKDLSSL SKGWRNFVRD NSLEVGDVCV  900
FELIKDLQTD ELMLKVHIFR ARRMPDRFVQ EHGDELLDAV RLIVPTDEFW SVGLKRSGKM  960
IWLHDGWQEF MEHHSIDCWY FLLFKYGQNS CFNVHIFDLT AAEIHYRLRC HGNAKLQDIS  1020
QDLSHVKEKE VGDNDGKTSV EIVDPLETEQ GPESSAKSSE LPHGAKRRKI APGKSKFWRC  1080
YETRSKEKEL PVSSNRTIYR TDTSKSFTSQ QLEKSVRSGR PQNRGRPWAA EANRAINAAK  1140
MFIPKNPYFT KILVEYNVVR SYTLNISAGF VREYMPKTSN VIELQDCDGN KWNVRCIRRK  1200
DQIYLSKGWS NFVRDTSLVA GDVCVFELIT DIQTAEHMLK VHIFHSRVEE SSTNLHTCSV  1260
TEPTLPVSKT CILQFSESKD TESSDASGPL SSNKTNCKTD TGKSSTSQQL EKSVRRGRPP  1320
KRGRPLAAEA NRSINSAKIF MPKDPYFMQI HYRLRSHGNA RLHHISQDLS HGKKIGGDND  1380
GESSVEIVNP LETEQGPESS AKSSELFHGA KKHKIAPGRH KFLRCYETRS KANRLHDKGQ  1440
VLNAKNLNMV GDISLTKPLL GKLVQQNMDT STYSAVVAGG VPNQDNAREG SKNEVYSAVV  1500
AGGVPNQDNA REGSKNDILQ RNENTSKSFP GQQLEKSVRC GRPHKRERSW AAEANRTINA  1560
AKLFMPKSPS FTAVLANYNV VRHHILNIPT EFAREYIPKT SNVIELQDCD GNKWNVRCIR  1620
RKDQIYLGKG WLNFVRDNSL EVRDVCVFEF IKELQADELM LKVHIFRARV EQNATTSLDT  1680
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-20389166723144B3 domain-containing transcription factor VRN1
4i1k_B6e-20389166723144B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357562.11e-177PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S4CJK21e-171A0A1S4CJK2_TOBAC; B3 domain-containing transcription factor VRN1-like
STRINGXP_009613233.11e-171(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-39B3 family protein