PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00016g01351.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 354aa MW: 40868.4 Da PI: 4.4347 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.9 | 4.1e-14 | 2 | 73 | 18 | 95 |
--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +p +f+ + +gk + ++ l+d+ g+ W + l k + ++++GW +F ++n ++ gDf++F +dg+ f +k Peaxi162Scf00016g01351.1 2 IPASFT-MYkNGK--LPEKVALRDKYGNMWPIGL--AKIERDLYFQEGWDKFTEENSVENGDFFIFDYDGNGVFD--FK 73 888997.553444..6779***************..*********************************988774..33 PP | |||||||
2 | B3 | 36.2 | 1e-11 | 252 | 331 | 9 | 90 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 ++ ++++l++p + +++++++ + ++t++d+ gr++e kl+++k + r++lt+GW + ++ n ++ +D ++ ++++ ++ Peaxi162Scf00016g01351.1 252 HAKRRDMLYIPADVLKDYNIE--LPSKMTIRDSAGREFEAKLKIWKDG-RIWLTGGWGRLCRWNLVEKKDRCICEFVRGkGKR 331 567899************866..6779***************999996.89**********************9988653444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 15.312 | 1 | 78 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.76E-11 | 2 | 75 | No hit | No description |
Pfam | PF02362 | 8.1E-12 | 2 | 70 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-15 | 2 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-16 | 2 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.5E-4 | 2 | 78 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-16 | 240 | 340 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.04E-16 | 240 | 328 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.968 | 244 | 343 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.01E-9 | 245 | 330 | No hit | No description |
SMART | SM01019 | 0.0015 | 247 | 343 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.8E-10 | 252 | 333 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
KIPASFTMYK NGKLPEKVAL RDKYGNMWPI GLAKIERDLY FQEGWDKFTE ENSVENGDFF 60 IFDYDGNGVF DFKLLGRTGC QKIGAGGLKS AVKSEDEEEE EEMNTHQKSE EPKVMNFDMD 120 SDSIISSSDS DEDYMVEEDD EEDEEYEVAE QETEDEATEE EEEEEASEEE EEANEKTVTL 180 KRKAPPSKET AEEEEENEMQ VILESKGPHS KAKCGRAKET KKREFVDYYG ADIFKSGLAT 240 QPKNPYFVAR VHAKRRDMLY IPADVLKDYN IELPSKMTIR DSAGREFEAK LKIWKDGRIW 300 LTGGWGRLCR WNLVEKKDRC ICEFVRGKGK RGLYLQVQVL HEEQLPTAAR KNSK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351837.1 | 1e-112 | PREDICTED: B3 domain-containing protein At5g60140-like | ||||
TrEMBL | M1AQ14 | 1e-110 | M1AQ14_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400027673 | 1e-111 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1091 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60140.1 | 6e-14 | B3 family protein |