PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00016g01343.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 279aa    MW: 31961.8 Da    PI: 9.7798
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00016g01343.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-1721104899
                               -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                        B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                               s v++   l++p +f++++  +  ++ + tl+ + g +W+vkl      ++ v+++GW++F k+n+Lk g+f+vF++dg+ +f  
  Peaxi162Scf00016g01343.1  21 STVTS--ELRIPAHFLRHIPDE--SPDKATLKCLCGGTWNVKL--HSDVDGLVMQQGWEKFQKDNQLKYGEFLVFRYDGNLQF-- 97 
                               44443..49*******888644..5668***************..999999**************************998888.. PP

                               EEEEE-S CS
                        B3  93 vvkvfrk 99 
                               +v++fr+
  Peaxi162Scf00016g01343.1  98 TVRIFRE 104
                               9999985 PP
2B373.33e-23175268198
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               f+k l+  +v+ks+ l++pk+f e+  ++   ++t+ l++++g+ W+v++    ++g + +++GWk+Fv +n+LkegD++vF+l+
  Peaxi162Scf00016g01343.1 175 FVKLLKGYNVNKSCFLYVPKSFREKLPSS--AKITVALYNSEGKDWKVNC--VAQRGYHAFSGGWKQFVTDNKLKEGDVCVFQLV 255
                               788888899*************9988655..5689***************..999999*************************** PP

                               SSSEE..EEEEE- CS
                        B3  86 grsefelvvkvfr 98 
                               + ++ el+v+vf+
  Peaxi162Scf00016g01343.1 256 NVDTNELKVSVFD 268
                               999999*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.61E-2111104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-2211105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.63412105IPR003340B3 DNA binding domain
CDDcd100173.44E-1713103No hitNo description
SMARTSM010196.5E-1115105IPR003340B3 DNA binding domain
PfamPF023623.5E-1523104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-24169268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-24170267IPR015300DNA-binding pseudobarrel domain
CDDcd100174.85E-23173268No hitNo description
SMARTSM010194.3E-17175270IPR003340B3 DNA binding domain
PROSITE profilePS5086316.003175270IPR003340B3 DNA binding domain
PfamPF023624.2E-21175268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MKKRNSLKID KRPIFYKIYN STVTSELRIP AHFLRHIPDE SPDKATLKCL CGGTWNVKLH  60
SDVDGLVMQQ GWEKFQKDNQ LKYGEFLVFR YDGNLQFTVR IFREHGLERR VKSTINGTNQ  120
EAQISNKVMN LKRPAKFPNI IHVDGEDDTE HGTPIKRVTP EKAEDLVITP DIPQFVKLLK  180
GYNVNKSCFL YVPKSFREKL PSSAKITVAL YNSEGKDWKV NCVAQRGYHA FSGGWKQFVT  240
DNKLKEGDVC VFQLVNVDTN ELKVSVFDDP PKSLLKLAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A9e-1415026718140B3 domain-containing transcription factor VRN1
4i1k_B9e-1415026718140B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501194.11e-131PREDICTED: B3 domain-containing protein Os11g0197600-like
TrEMBLA0A1S4CJU21e-130A0A1S4CJU2_TOBAC; B3 domain-containing protein Os11g0197600-like
STRINGXP_009613237.11e-130(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-23B3 family protein