PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00015g00043.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 743aa    MW: 82944.4 Da    PI: 6.7174
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00015g00043.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.4e-2194149156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               r+k +++t++q++e+e+lF+++++p++++re+L+k+lgL  rqVk+WFqNrR++ k
  Peaxi162Scf00015g00043.1  94 RKKYHRHTTQQIREMEALFKESPHPDEKQREQLSKQLGLHPRQVKFWFQNRRTQIK 149
                               7999************************************************9877 PP
2START173.31.6e-542644803206
                               HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                     START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdet 75 
                                ++a++el ++a+++ep+W +s     e++n+de++++f+++k+         s+ea+r++g+v+m+l++lv++++d++ qW+e+
  Peaxi162Scf00015g00043.1 264 VNQAMEELRTMATSGEPLWIRSFetgrEILNYDEYMKEFSKDKSgdgwpnkrMSIEASRETGIVFMELPRLVQSFMDVN-QWKEM 347
                               6789******************99******************99***********************************.***** PP

                               -S....EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EES CS
                     START  76 la....kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaell 148
                               ++    ka+t++vi++g       ga+qlm+aelq+++p+v  R+++fvRy++q + g w+ivdvSvd  +++  ++s+ +  + 
  Peaxi162Scf00015g00043.1 348 FPsmisKAATVDVICNGeganswdGAVQLMFAELQMPTPVVGtREVYFVRYCKQISVGHWAIVDVSVDKVEDNI-DASLLK--HS 429
                               ************************************************************************98.888888..55 PP

                               SEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 149 pSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                S +        h +vtwveh +++++++h+l+r +v+sg+a+ga++w+atlq+qce+
  Peaxi162Scf00015g00043.1 430 KSNC-------SHVQVTWVEHLECQKSIVHSLYRLIVNSGQAFGARRWMATLQQQCER 480
                               5555.......689******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-2279145IPR009057Homeodomain-like
SuperFamilySSF466892.8E-2181152IPR009057Homeodomain-like
PROSITE profilePS5007118.07491151IPR001356Homeobox domain
SMARTSM003899.9E-1993155IPR001356Homeobox domain
PfamPF000461.4E-1894149IPR001356Homeobox domain
CDDcd000864.41E-1798149No hitNo description
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PROSITE profilePS5084824.481253483IPR002913START domain
SuperFamilySSF559613.85E-25258480No hitNo description
CDDcd088751.58E-89258479No hitNo description
SMARTSM002348.8E-50262480IPR002913START domain
PfamPF018524.5E-42264480IPR002913START domain
SuperFamilySSF559613.85E-13511731No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MGVVDMSNNH PPPSQTKDFF PSPSPALSLS LTEEVDDGSA SRGRAREEST VEISSENSGP  60
VRSRGSNEDF EHDADTCNED EELDPNNSNK KKKRKKYHRH TTQQIREMEA LFKESPHPDE  120
KQREQLSKQL GLHPRQVKFW FQNRRTQIKA IQERHENSLL KAELEKLRGE NKGLRKNPSC  180
PNCGFAGSSN EAPTIPAEEQ QLRMENARLR AEVEKLRAAL GKYPRGTSPN SSSCSGGNDE  240
GNRSALDFYT GIFGLESSRV MHVVNQAMEE LRTMATSGEP LWIRSFETGR EILNYDEYMK  300
EFSKDKSGDG WPNKRMSIEA SRETGIVFME LPRLVQSFMD VNQWKEMFPS MISKAATVDV  360
ICNGEGANSW DGAVQLMFAE LQMPTPVVGT REVYFVRYCK QISVGHWAIV DVSVDKVEDN  420
IDASLLKHSK SNCSHVQVTW VEHLECQKSI VHSLYRLIVN SGQAFGARRW MATLQQQCER  480
LLFSMATNIP TKDTTGVSTL AGRKSILTLA QRMTYSFYRM LGASSYNTWN KVPSKTGLED  540
IRVASRKNLT DHSEPLGIII CAVSSIWLPV SRNVLFEYLK DETRRHEWDV MSNGGPVQSI  600
ANLAKGQDKG NAVSIQAVKL RENSMWILQD TCTNAYESAV VYAPVDITGM QSVMTGCDSS  660
NTAVLPSGFS ILPDGVESRG LVISSRPDDR SSDGGSLLTV VFQILTSNTP TAKVSKESVE  720
SVANLLSCTL HKIKTSFQSE DGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994KKKKRK
28995KKKKRKK
39195KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592772.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2-like isoform X1
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A1U7WHU10.0A0A1U7WHU1_NICSY; homeobox-leucine zipper protein GLABRA 2
STRINGXP_009592772.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62282328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]