![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00014g02915.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 257aa MW: 29152.5 Da PI: 6.5071 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.2e-30 | 128 | 187 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv+rs edp++++ tYegeHnh+ Peaxi162Scf00014g02915.1 128 VKDGYHWRKYGQKVTRDNPSPRAYYKCSFApTCPVKKKVQRSVEDPSILVATYEGEHNHP 187 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.7E-30 | 121 | 189 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.749 | 123 | 189 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-26 | 124 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-33 | 128 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.5E-25 | 129 | 187 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
DKSFTFDLNT NPSLQNINEN AHEKLDEELI RMREENKKLA TMLTTSCENY NSLQTHLIDL 60 LQKYSHHDDG EDNCKLSLSR KRKAEDACCV NTSEIISEEV SPKRPREIRT NVSTVCVKTT 120 PSDQSSMVKD GYHWRKYGQK VTRDNPSPRA YYKCSFAPTC PVKKKVQRSV EDPSILVATY 180 EGEHNHPHPS QAEVTVPLNQ TDPKFLTNVQ RFMENIDTNS LQQDLVAQMA SSLTKNPSFT 240 AAVAAAISGN LFEYDYS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-20 | 122 | 190 | 11 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-20 | 122 | 190 | 11 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312469.1 | 1e-143 | probable WRKY transcription factor 40 | ||||
Refseq | XP_009610348.1 | 1e-143 | PREDICTED: probable WRKY transcription factor 40 | ||||
Refseq | XP_016470035.1 | 1e-143 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 3e-63 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | Q9SLW8 | 1e-141 | Q9SLW8_TOBAC; mRNA, 1346 bp sequence | ||||
STRING | XP_009610348.1 | 1e-142 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4500 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-65 | WRKY DNA-binding protein 40 |