PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00013g01518.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 370aa    MW: 41776.8 Da    PI: 6.377
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00013g01518.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31054e-33105215199
                               EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                               f+k ltpsdv+k++rlv+pk++ae++            +++ e++  l++ede g++W+++++y+++s++yvltkGW++Fvk+++
  Peaxi162Scf00013g01518.1 105 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgninnnnnNESGEKGLLLSFEDECGKTWRFRYSYWNSSQSYVLTKGWSRFVKDKR 189
                               99****************************99999877333347789************************************** PP

                               --TT-EEEEEE-SS.SEE..EEEEE-S CS
                        B3  74 LkegDfvvFkldgr.sefelvvkvfrk 99 
                               L++gD+v+F+++ r ++++l+++++r+
  Peaxi162Scf00013g01518.1 190 LDAGDIVLFERH-RlDGERLFIGWRRR 215
                               **********75.559999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-4294223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-31100216IPR015300DNA-binding pseudobarrel domain
CDDcd100174.93E-30103206No hitNo description
PfamPF023625.0E-30105216IPR003340B3 DNA binding domain
SMARTSM010192.7E-27105216IPR003340B3 DNA binding domain
PROSITE profilePS5086314.212105216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSINHISSDL PETLWWTKQQ QQYIMMDSTK KSSSPSTLWP NNTPQLYHHQ HPPTPPETTT  60
TMFGFNLNNT NNEEDEELEE QQISTEEKDQ DFEREEQEIP KEHLFEKPLT PSDVGKLNRL  120
VIPKQHAEKY FPLSGNINNN NNNESGEKGL LLSFEDECGK TWRFRYSYWN SSQSYVLTKG  180
WSRFVKDKRL DAGDIVLFER HRLDGERLFI GWRRRNAMPS TSNITTAEST AVVLPPGIMG  240
GGGGSGWAHV YYGGSGGHPY PGAGLPYQPD CLHAGRGAMQ NQTIPASVNN TRRQVRLFGV  300
NLECEADESS WSEPPPTPDG GGSSTSSHHH HQGQGQASQH YYQHQFQYSK PQVAVPAAAS  360
SYNNNHHNHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-501012154113B3 domain-containing transcription factor NGA1
5os9_B3e-501012154113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776788.11e-180PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8RYD32e-67Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A1U7WDQ71e-178A0A1U7WDQ7_NICSY; B3 domain-containing protein At2g36080-like
STRINGXP_009776788.11e-179(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.17e-66B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]