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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00013g00917.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | TCP | ||||||||
Protein Properties | Length: 350aa MW: 39623 Da PI: 8.1987 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.1 | 3.1e-38 | 125 | 285 | 3 | 132 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 kdrhski T++g+RdRR+Rls++ a++fF Lqd+L fdk+skti WLl +++ aikelt+ Peaxi162Scf00013g00917.1 125 SNKDRHSKINTAQGPRDRRMRLSLDAARKFFNLQDMLQFDKPSKTIGWLLIKSEYAIKELTKGiggaldpkqsftstrnigaist 209 579****************************************************************999999988888877753 PP TCP 66 ssssa...sec.......eaesssssasnsssg..............kaaksaakskksqksaasalnlakesrakarararert 126 + ++ sec + +++ ++k+k + ++ a+++ + +esr+ ara+arert Peaxi162Scf00013g00917.1 210 N--ASsniSECeskvvdnL-------------TiasdefssndkmpeGSSSIKEKKKAKVARRATFHTFTRESRNLARANARERT 279 1..3322344432222211.............0122233344567764444555888888888888******************* PP TCP 127 rekmri 132 + k+++ Peaxi162Scf00013g00917.1 280 KRKKSL 285 *99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-38 | 125 | 283 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.11 | 126 | 184 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.683 | 265 | 282 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MYPPSNNNCN YNNPISSSLF HNIPSPYNQY EQESLFQYYH DYYLQEQPVP FVDDPGLDIF 60 VENAETPNNQ LNCTDSVKIL DENVANSQNE EGGEGEEGCE NKGGEMSSTT SNRQQISRNK 120 TSRSSNKDRH SKINTAQGPR DRRMRLSLDA ARKFFNLQDM LQFDKPSKTI GWLLIKSEYA 180 IKELTKGIGG ALDPKQSFTS TRNIGAISTN ASSNISECES KVVDNLTIAS DEFSSNDKMP 240 EGSSSIKEKK KAKVARRATF HTFTRESRNL ARANARERTK RKKSLEDLCA QVQHSNMVNH 300 SLNEVEELTS HQNNQLLGAK EINRADEKSV YRLAILWKAV RILARELIKT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009608156.1 | 2e-78 | PREDICTED: transcription factor TCP12-like isoform X2 | ||||
Refseq | XP_016448763.1 | 2e-78 | PREDICTED: transcription factor TCP12-like isoform X2 | ||||
TrEMBL | A0A1J6ICT7 | 9e-78 | A0A1J6ICT7_NICAT; Transcription factor teosinte branched 1 | ||||
STRING | XP_009608155.1 | 7e-78 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 8e-24 | TCP domain protein 12 |