PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00013g00838.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 548aa    MW: 60631.8 Da    PI: 7.6783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00013g00838.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-13257304255
                               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               r +h++ E+rRR++iN++  +Lre++P++    ++K +Ka+ L +++eYI+ Lq
  Peaxi162Scf00013g00838.1 257 RSKHSATEQRRRSKINDR--QLREIIPNS----DQKRDKASFLLEVIEYIQFLQ 304
                               889**************8..********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.0E-19252324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-15253324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.08255303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.77E-12257306No hitNo description
PfamPF000108.8E-11257304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9261309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MELPQSRPFG TEGRKMTHDF LSLYSPIEQD PRPPQGSYLK THDFLQPLEQ TRETVGKKTK  60
IEIEAVEKSR SRAPPSSEHS LPGGIGTFSI SYVHQKVPKP EANLFAGTQA SSTERDDRNS  120
NCSSYSGSGF TLWNESARNK GKTGKENLGG DRHVVRETGE NIGGGQPSTS LERQSQLSSN  180
HNHNNATLST LSSAQQPSAV ENQSFLNMIT SAKNAQEEYD DEEEEYDVKK ESPSFSRGNL  240
SVKVDGKSSD QKPNTPRSKH SATEQRRRSK INDRQLREII PNSDQKRDKA SFLLEVIEYI  300
QFLQEKAHKH EDSYEGSEQK PSMLPWNKSH GMTQGFFDRS QSINSASSPA LICAGKFDEN  360
KIQTTSPANG QTLEPNRTST MKESSRQSEF SNKAENLCMQ PNAFPFCGST QIESLQSRLA  420
SGAGTLELNS QPQFCLSRSN MTDHAVTNDK LKGQEVIIEG GTISISSVYS KRLLNTLTQA  480
LQTSGVDMSQ ASMSVQIDLG KRANDRSNAS ASNFKGDSVS TSNQPIPQFV DTRTRDESVH  540
VFKRLKTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754459e-51HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755189e-51HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793272.10.0PREDICTED: transcription factor BIM1-like isoform X1
RefseqXP_016493370.10.0PREDICTED: transcription factor BIM1-like isoform X1
TrEMBLA0A1S4BWU10.0A0A1S4BWU1_TOBAC; transcription factor BIM1-like isoform X1
TrEMBLA0A1U7XMJ40.0A0A1U7XMJ4_NICSY; transcription factor BIM1-like isoform X1
STRINGXP_009793272.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.46e-89bHLH family protein