PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00013g00829.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NF-YB

Protein Properties

Length: 392aa MW: 43195.4 Da PI: 4.5028

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00013g00829.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	39.9	1e-12	30	76	38	84
NF-YB 38 cvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 c +efi +++se+++ c+re+++ti+++ +l al lGf +y+e++ Peaxi162Scf00013g00829.1 30 CCAEFINLISSESNEVCNREDKRTIAPEHVLKALEVLGFGEYIEEVY 76 899****************************************9874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.86E-22	26	125	IPR009072	Histone-fold
Pfam	PF00808	1.8E-8	27	63	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.1E-23	29	122	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MLPPDVRVAR DTQDLLIDCC VAKCFLLLLC CAEFINLISS ESNEVCNRED KRTIAPEHVL 60 KALEVLGFGE YIEEVYGAYE QHKLETMDTG RAGKSTNAAE MTEEEALAEQ QRMFAEARAR 120 MNGGVTVPPK QQDSESEQQR MLAEARARMN GGVTVPPKQQ VSESEQQRMF AEAHARMNGG 180 VTVPPKQQDS DAEQQRMFAE AHASTNVGVP VPQQDALAEQ QRMFAEACAR MNGGVTVPPK 240 QQDALAEQQR LFAEACARMN DGVTIPPNQQ DALAEQQRMF AEAFARMNGG VTVPPKQQDA 300 LAEQQRMFAE ACARMNGDVT VPPKQQDALA EQQRLFAEAF ARMNGSVTVT PKQQDSEAEQ 360 QRMFAEASAK MNGGVTVPPK QQDSEAEQNL NS

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MLPPDVRVAR DTQDLLIDCC VAKCFLLLLC CAEFINLISS ESNEVCNRED KRTIAPEHVL  60
KALEVLGFGE YIEEVYGAYE QHKLETMDTG RAGKSTNAAE MTEEEALAEQ QRMFAEARAR  120
MNGGVTVPPK QQDSESEQQR MLAEARARMN GGVTVPPKQQ VSESEQQRMF AEAHARMNGG  180
VTVPPKQQDS DAEQQRMFAE AHASTNVGVP VPQQDALAEQ QRMFAEACAR MNGGVTVPPK  240
QQDALAEQQR LFAEACARMN DGVTIPPNQQ DALAEQQRMF AEAFARMNGG VTVPPKQQDA  300
LAEQQRMFAE ACARMNGDVT VPPKQQDALA EQQRLFAEAF ARMNGSVTVT PKQQDSEAEQ  360
QRMFAEASAK MNGGVTVPPK QQDSEAEQNL NS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	4e-25	4	118	30	133	Transcription Regulator NC2 beta chain

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	9e-47	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	9e-47	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016471364.1	1e-141	PREDICTED: protein Dr1 homolog
TrEMBL	A0A1S4A447	1e-139	A0A1S4A447_TOBAC; protein Dr1 homolog
STRING	XP_009792100.1	1e-117	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA24898	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	1e-58	nuclear factor Y, subunit B13