PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Peaxi162Scf00013g00140.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

TCP

Protein Properties

Length: 332aa MW: 36667.8 Da PI: 9.9346

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00013g00140.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.9	1e-39	63	208	2	103
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s+ Peaxi162Scf00013g00140.1 63 PPKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSM 147 789******************************************************************9998777777777755 PP TCP 86 ssg...........................................kaaksaakskksqks 103 s + + + +++ + +q+ Peaxi162Scf00013g00140.1 148 SVPsqlrssyfspnfslsqrrglfqgiglssersattllnfqsgnsSPSMNHQLQAAKQEI 208 5556666677788888888888888888765544444444444432222222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-43	68	241	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.87	69	123	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEGGGDDHLH NHHQHHHHQH QYNNFPFQLL EKKEDEPCSS SSAAANTNPN NSLQITETSK 60 KPPPKRASTK DRHTKVDGRG RRIRMPALCA ARVFQLTKEL GHKSDGETIE WLLQQAEPSV 120 IAATGTGTIP ANFTSLNISL RSSGSSMSVP SQLRSSYFSP NFSLSQRRGL FQGIGLSSER 180 SATTLLNFQS GNSSPSMNHQ LQAAKQEIRD NSLDLTETSI EESLNRKRRH EIDLLQQNEQ 240 QQMGNYMLQS STNGTMPTSH SSVPANFWMV ANTNNQVLGG DPVWTFPSVN NAGAAAAAAL 300 YRNHVPNRMR VGPTRITMIG TIQRATIIPK ID

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269\|PubMed:17953649, ECO:0000269\|PubMed:21668538, ECO:0000269\|PubMed:22155632, ECO:0000269\|PubMed:22267487, ECO:0000269\|PubMed:24689742, ECO:0000269\|PubMed:25655823, ECO:0000269\|PubMed:25757472, ECO:0000269\|PubMed:28132837}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269\|PubMed:17953649}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009794435.1	1e-167	PREDICTED: transcription factor TCP14-like
Swissprot	Q93Z00	2e-56	TCP14_ARATH; Transcription factor TCP14
TrEMBL	A0A1U7Y6K3	1e-166	A0A1U7Y6K3_NICSY; transcription factor TCP14-like
STRING	XP_009794435.1	1e-166	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2882	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	7e-51	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14

Publications ? help Back to Top
Steiner E, et al. The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin. Plant Physiol., 2016. 171(2): p. 1485-94 [PMID:27208284] Yang L, et al. Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence. Cell Host Microbe, 2017. 21(2): p. 156-168 [PMID:28132837] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]