PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00013g00103.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NAC

Protein Properties

Length: 272aa MW: 30765.7 Da PI: 5.6521

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00013g00103.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.8	9e-49	6	124	1	121
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhP+deel+++yL++kv++ ++++ ++i++vd++k+ePwdLp+k++ +eke+yfFs +d+ky+tg r+nrat++gyWk+ Peaxi162Scf00013g00103.1 6 LPPGFRFHPNDEELITYYLTNKVSNFNFTA-RAIADVDLNKCEPWDLPAKASMGEKELYFFSLKDRKYPTGLRTNRATEAGYWKT 89 79***********************999.89***********999999*************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdW 121 tgkdke++ +g l+g+kktLvfy+grapkgekt+W Peaxi162Scf00013g00103.1 90 TGKDKEIFG-EGVLIGMKKTLVFYRGRAPKGEKTNW 124 *****.99********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-54	3	135	IPR003441	NAC domain
PROSITE profile	PS51005	45.487	6	161	IPR003441	NAC domain
Pfam	PF02365	9.2E-22	7	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MEEINLPPGF RFHPNDEELI TYYLTNKVSN FNFTARAIAD VDLNKCEPWD LPAKASMGEK 60 ELYFFSLKDR KYPTGLRTNR ATEAGYWKTT GKDKEIFGEG VLIGMKKTLV FYRGRAPKGE 120 KTNWEEWVLC RVFHKSSTVK KPQQTSSSPQ SEESPCDTYT LANELEDIDI PSYNGLAIPS 180 SGIVNNISLQ NYNTHDNIMN LNMNLAAATR EATSLLSSNL PLVNSLLCIP HFGIDLYPNF 240 TVDAPSSSMV LDHVQQQQQP HEQSYKLGSN IW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-51	1	141	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-51	1	141	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-51	1	141	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-51	1	141	12	171	NO APICAL MERISTEM PROTEIN
4dul_A	6e-51	1	141	12	171	NAC domain-containing protein 19
4dul_B	6e-51	1	141	12	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009763274.1	1e-119	PREDICTED: NAC domain-containing protein 77-like isoform X1
Refseq	XP_016442160.1	1e-119	PREDICTED: NAC domain-containing protein 79-like isoform X1
Swissprot	Q9FK44	8e-72	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1S3XQM1	1e-117	A0A1S3XQM1_TOBAC; NAC domain-containing protein 79-like isoform X1
TrEMBL	A0A1U7VLP9	1e-117	A0A1U7VLP9_NICSY; NAC domain-containing protein 77-like isoform X1
STRING	XP_009763274.1	1e-118	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	7e-83	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]