PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00011g01634.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 679aa    MW: 77744.7 Da    PI: 7.8227
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00011g01634.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.14.7e-2162155190
                      FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkl 81 
                               +fY e+Ak++GFs+r+++++ +    +  t+r fvC + g++  + ++++k +r+r+++r+gC+a ++++k+      +w+vt +
  Peaxi162Scf00011g01634.1  62 EFYAEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKATNDSKPQRNRKSSRCGCQAYMRISKTVdvgVPEWRVTGF 146
                               6**************9998877356667999****************99**********************98766779****** PP

                      FAR1  82 eleHnHela 90 
                                ++HnHel 
  Peaxi162Scf00011g01634.1 147 INQHNHELL 155
                               *******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.9E-1862155IPR004330FAR1 DNA binding domain
PfamPF105514.8E-21278369IPR018289MULE transposase domain
PROSITE profilePS509669.705556589IPR007527Zinc finger, SWIM-type
PfamPF044347.5E-7559587IPR007527Zinc finger, SWIM-type
SMARTSM005759.3E-6564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MSEEAGQMMV LYGEPSDQQS LSLDDTSSTE ESPDQTRLSL ETTNDAIPFI GQRFFNHDAA  60
YEFYAEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKATND SKPQRNRKSS  120
RCGCQAYMRI SKTVDVGVPE WRVTGFINQH NHELLEPSQV RFLPAYRSIS DADKSRILMF  180
AKTGISVQQM MRLIELEKGV EPGYLPFTEK DVRNLLQSFK KVDPEDESID LLRMCRNIKE  240
KDSNFKYDFA LDSSNKLENI AWSYASSIHS YDMFGDAVVF DTTHRLTAFD MPLGIWIGVN  300
NYGMPCFFGC VLLREETLRS YSWALKAFLA FMNGKAPQTI LTDQNMCLKE AIDLEMPSTK  360
HALCIWLIVS KFPSWFNAVL GERYNEWKAE FHRLYNLESM EDFELGWRDM VNLYGLHTNR  420
HISSLFALRS LWALPYLRSH FFAGMTSAFH SKSINAFIQR FLSAQTRLAH FVEQVAVTVD  480
FKDQAGEQQT MQQNLQNICL KTGAPMEAHA AAVLTPFAFC KLQEQLVLAA HYASFQMEDG  540
FLVRHHTKLE GGRKVYWVPR EGIISCSCHQ FEFSGLLCRH ALRVLSTGNC FEIPERYLPH  600
RWRRISTPST KALQNTQNDH SERVQLLQNM VSALVTESAK STERLGIATE SVSILLTRIR  660
EHPICSLGVR ELSSNQRNL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349293.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1
RefseqXP_015165018.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X2
RefseqXP_016486262.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1S4BBL60.0A0A1S4BBL6_TOBAC; protein FAR1-RELATED SEQUENCE 11-like isoform X1
STRINGXP_009601478.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108962124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]