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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00011g00739.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 282aa MW: 31274.2 Da PI: 10.2188 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 60.7 | 3.2e-19 | 17 | 69 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 Y eC++N+ a+ ++a+DGC f p g g++ a++C CgCHRnFHRr + Peaxi162Scf00011g00739.1 17 LYGECMRNQLADSMTYATDGCHGFGPG-GPPGSIGAMRCQTCGCHRNFHRRLDT 69 7*************************8.888*******************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-4 | 12 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.4E-17 | 17 | 66 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-14 | 18 | 66 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 17.701 | 18 | 67 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MFRANKPWAN GSITPALYGE CMRNQLADSM TYATDGCHGF GPGGPPGSIG AMRCQTCGCH 60 RNFHRRLDTG NHQIPPPSHP RRQIYGGTRL GYYPPTIILL QPPPPATRPN APPPTNLTMG 120 EANTNANSLT HSFRVSTGLE NISSTSLNLP CVHPPFTCTG GSTKGKEKMD ERTLRRLASN 180 KSPLPPLPQS APLGVYHRRG RDLIRARIAA KINNGEGSSR KRNFYSRGYY LREEMRERVR 240 LLSKQLEWLN VKNKLKGKNL KHESSSDKNE SDDDESHSDS DS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15336 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74660.1 | 1e-07 | mini zinc finger 1 |