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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00011g00321.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 342aa MW: 37892.3 Da PI: 7.6905 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 107.4 | 8.3e-34 | 65 | 120 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v YkeClkNhAa++GghavDGCgEfmps++++ +++++lkCaACgCHRnFH+r++ Peaxi162Scf00011g00321.1 65 VLYKECLKNHAANIGGHAVDGCGEFMPSPTANpADPTSLKCAACGCHRNFHKRDEP 120 78******************************9*******************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.2E-28 | 65 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.768 | 67 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.4E-30 | 67 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-23 | 67 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.25E-18 | 199 | 268 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-29 | 199 | 269 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.7E-26 | 207 | 264 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MDLTNNTTTV KNQEQVEQIV AEIEVETPTN THQIHKPKPF STTNGVLKRK NPYTLPHNLH 60 HPVVVLYKEC LKNHAANIGG HAVDGCGEFM PSPTANPADP TSLKCAACGC HRNFHKRDEP 120 EELKSIPLPA IEYKPHHRHH PPPPLPPGGD HSGSPNDESP SPPPISSAYY PSSAPHMLLA 180 LSTGFSGEKN ILNPITRTPM TDNSNSRKRF RTKFTPDQKA KMMEFAEQVG WKMQKRDEDL 240 VSKFCNEIGV EKGVLKVWMH NNKNTVGKKS DQPNSDDKSN NNDNGIGNGN GNSNENYVSG 300 FCIVSRNNTD TEFHKYENKK DDIPSQVIIN HVVVTTNGSS TT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-21 | 206 | 265 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233362.1 | 1e-116 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LXG0 | 1e-67 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A3Q7F010 | 1e-114 | A0A3Q7F010_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g067320.1.1 | 1e-115 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 9e-62 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
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