PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00011g00124.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 311aa MW: 35945.1 Da PI: 8.6098 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.8 | 4.5e-11 | 4 | 45 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+ + r tf kR++ + KK +EL +LC+++ ++i++++++ Peaxi162Scf00011g00124.1 4 ISKEKARDATFKKRKESLKKKLNELTTLCNVNGCMIMYGPEQ 45 888999*********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0027 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.367 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-12 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-13 | 4 | 44 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MELISKEKAR DATFKKRKES LKKKLNELTT LCNVNGCMIM YGPEQSNGSK SEPEIWTNSS 60 NTTKSLQEKE IQNLIDEYKK SDVVTRSAKA FGLSDYFTDR NKNVEKELIK LRKMNMDKKY 120 PGWLKFMDHL SEIKLRQFIS IFEDKVEKVK LRIDLLKGNM NIASEYFVEA AREGMELSQL 180 TNYCDNVSPL MVQGGSEMGG FMNNHHEQAI YSYCNSIVHH HEQAIYPYWQ YNGATSSSGS 240 NNTRDALMKY ETMMTYNMIC NNQMPYSPYV APTIRQPAPY MMMPGTFPQI DLPSRENEGD 300 VKGKLLPYLR K |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019255836.1 | 1e-133 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1J6IR27 | 1e-132 | A0A1J6IR27_NICAT; Agamous-like mads-box protein agl80 | ||||
STRING | XP_009774508.1 | 1e-131 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2457 | 22 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 1e-07 | AGAMOUS-like 82 |