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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00008g04011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C2H2 | ||||||||
Protein Properties | Length: 643aa MW: 66611.3 Da PI: 8.0567 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 1.9e-05 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Peaxi162Scf00008g04011.1 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP | |||||||
2 | zf-C2H2 | 16.8 | 1.9e-05 | 132 | 154 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H++ + Peaxi162Scf00008g04011.1 132 WKCDKCSKNYAVQSDLKAHLKIC 154 58******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.85E-8 | 55 | 78 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 55 | 78 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 56 | 78 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 97 | 127 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.3E-5 | 120 | 153 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.85E-8 | 127 | 152 | No hit | No description |
SMART | SM00355 | 65 | 132 | 152 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.912 | 132 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence Send to blast |
KKSVTMNDSI GSGELSVSSS GNQETGKKRR NLPGMPDPDA EVIALSPKTL LATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRTSN EVKKRVYVCP EPTCVHHDPS RALGDLTGIK 120 KHFCRKHGEK KWKCDKCSKN YAVQSDLKAH LKICGTKEYK CDCGTMFSRR DSFITHRAFC 180 DVLTKDSEKA KIAVITPNAD EDPKVLAVAS SSPLPPPTPP APPPASEPES PVVLSPAAPE 240 PLPPAVPLST AVMSSDSPIQ SSELAESTHT NSSGNTTKQV MEETAVVASL SGLCNSNLSS 300 NGCTSSNSFA SLAGISSRSS SSNGSTSSSS IFPSFTGICS SSRSSSSNGS TSSSSMFPSF 360 TGICSTSRSS SSNGCTSSSS SIFPSMTGIC SSSTSSSSTG STSSSNIFAS FAGIYSSSSS 420 SSSNGSTSSS TFASLFASST ASVSLPSQAP QFTDWFRPMA PEPPPDIEPP SSMEPISLCL 480 AMNHGSSMFQ PAGQERRQYA PAPQPAMSAT ALLQKAAQMG ATATNSSLLR GLGLFSSSSS 540 SHGQHEWSGR QVDTDGASLA VGLGLGLPCD DGSGLKELML GTPSVFGPKH PTLDLLGLGM 600 AAGGGPTPGL SALITSMGSN LDVPAAGSFG SGELSGKELG RNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-30 | 128 | 198 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 2e-30 | 128 | 198 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233509.1 | 0.0 | protein indeterminate-domain 1-like | ||||
Swissprot | Q9LVQ7 | 1e-112 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
Swissprot | Q9SCQ6 | 1e-113 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A3Q7EZH3 | 0.0 | A0A3Q7EZH3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g062940.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-108 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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