PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00008g03526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 302aa MW: 33964.1 Da PI: 8.4776 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.9 | 2.1e-09 | 168 | 215 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Peaxi162Scf00008g03526.1 168 SHSLAERARREKISKKMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 215 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.93E-8 | 162 | 219 | No hit | No description |
SuperFamily | SSF47459 | 5.63E-17 | 162 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-18 | 164 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.11 | 164 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-7 | 168 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-9 | 170 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MSVLERQRAV LERLYDQSKH QLSSLPQQHL FHFNNLMTGN MMGCLEVPID DQRLNQNFTN 60 FNTFVTQNNC QEMARPSFST VSNSSVTTVS KGQDQSTIVA SRENAFSEEE DCKTKRPEGK 120 AGEVKSEITE KSQRGASGNS SKENSKTSEV QKPDYIHVRA RRGQATDSHS LAERARREKI 180 SKKMKYLQDL VPGCNKVTGK AGMLDEIINY VQSLQKQVEF LSMKLAALNP QLHLNTDSFF 240 TKDFSNCMVN FPTVAMPTLT EYNIIQQQQG SSGVAQMLHQ RRENNLMSFQ ESSLGSTAAA 300 NF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561840.1 | 1e-148 | PREDICTED: transcription factor HBI1 | ||||
TrEMBL | A0A2G2XB17 | 1e-148 | A0A2G2XB17_CAPBA; Transcription factor HBI1 | ||||
STRING | XP_009592416.1 | 1e-145 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4000 | 21 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18300.2 | 1e-55 | bHLH family protein |