PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00008g02313.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 249aa MW: 27685.6 Da PI: 4.7472 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.7 | 1.1e-09 | 108 | 187 | 3 | 91 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 Y+ +Ak G + +s+skk+k +g + +++C + gk ++ +++ ++++C ak++ ++++ + +w v++++ +Hn Peaxi162Scf00008g02313.1 108 YKVHAKLKGLCILRSSSKKHKISGVCNYIHYCCHRIGKCDNATTT----------KKIQCPAKVNANLTTdRITWAVNSVNINHN 182 999**********************************99987666..........9*************98899*********** PP FAR1 87 Helap 91 H+l p Peaxi162Scf00008g02313.1 183 HDLEP 187 **975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.8E-7 | 108 | 187 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
METDENESDV NALILREAFN RLFDGDDDDN LLNKGGGDEK IEGTSVNGNE AEDVEGFDEE 60 VEGSDEDVVG GNEDVQGGDV EGGDEDVEGG DVDIEYRCNV RLGPQSGYKV HAKLKGLCIL 120 RSSSKKHKIS GVCNYIHYCC HRIGKCDNAT TTKKIQCPAK VNANLTTDRI TWAVNSVNIN 180 HNHDLEPDLS RLMPGHRHIS KISIRWSRKL RLFAGGLQNF INNSRKLNLE PGDAELIRHF 240 FLRYANEGE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1301 | 9 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 1e-07 | FAR1-related sequence 4 |