PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00007g01220.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

CO-like

Protein Properties

Length: 407aa MW: 44080.5 Da PI: 5.9301

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00007g01220.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.9	1.3e-05	46	78	4	34
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCllee..H 34 +C+++++ ++ C d++++lC+ C +++ Peaxi162Scf00007g01220.1 46 LICEKCSSMPAVTRCIDDEMCLCQACESNGngC 78 68************************9886552 PP
2	CCT	62.4	1.5e-21	351	394	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re+a++RY+eK+ktR ++K+irY+sRKa+A++R+RvKGrFvk+ Peaxi162Scf00007g01220.1 351 REKAKMRYNEKKKTRMYSKQIRYASRKARADTRKRVKGRFVKAG 394 99***************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	5.0E-6	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	0.00235	3	47	No hit	No description
PROSITE profile	PS51017	14.565	351	393	IPR010402	CCT domain
Pfam	PF06203	1.1E-16	351	393	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MEPLCDFCGL VRPVVYCTSD LARLCFDCDG LVHSANFLSR RHPRSLICEK CSSMPAVTRC 60 IDDEMCLCQA CESNGNGCTV PGHRRQKLNS YSGCPSSAEF AKIWSGVNEM ANSSNVANTC 120 SFDTSCSSLS INENNCSTPS LEPRGNELSS LVTIPSIPIP CNPIYLPPFR KQPASHFPEG 180 SNLPELGCST IKDLGFQGGD NLLEAIDLDD ATLSLDGGCE IFGSSRQSRP TFTSEESRGL 240 DCLASSSGHQ ECIGFQSSQM AAASSSTNLL HTMSATANSM LMNSGCNGNI GLAFPPGPVH 300 SSISLSLSNI TGESSAATDC QDCGLSPDFL TGESPWELNL DMETSDRKQA REKAKMRYNE 360 KKKTRMYSKQ IRYASRKARA DTRKRVKGRF VKAGEAYDYD PLAARDF

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MEPLCDFCGL VRPVVYCTSD LARLCFDCDG LVHSANFLSR RHPRSLICEK CSSMPAVTRC  60
IDDEMCLCQA CESNGNGCTV PGHRRQKLNS YSGCPSSAEF AKIWSGVNEM ANSSNVANTC  120
SFDTSCSSLS INENNCSTPS LEPRGNELSS LVTIPSIPIP CNPIYLPPFR KQPASHFPEG  180
SNLPELGCST IKDLGFQGGD NLLEAIDLDD ATLSLDGGCE IFGSSRQSRP TFTSEESRGL  240
DCLASSSGHQ ECIGFQSSQM AAASSSTNLL HTMSATANSM LMNSGCNGNI GLAFPPGPVH  300
SSISLSLSNI TGESSAATDC QDCGLSPDFL TGESPWELNL DMETSDRKQA REKAKMRYNE  360
KKKTRMYSKQ IRYASRKARA DTRKRVKGRF VKAGEAYDYD PLAARDF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	1e-36	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019246655.1	1e-154	PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1
TrEMBL	A0A1J6J0L7	1e-153	A0A1J6J0L7_NICAT; Zinc finger protein constans-like 12
STRING	XP_009787133.1	1e-151	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4231	17	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	4e-80	B-box type zinc finger protein with CCT domain