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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00005g00388.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 211aa MW: 23691.3 Da PI: 9.8541 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 120.5 | 5.9e-38 | 145 | 211 | 4 | 70 |
S1FA 4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + ve+kG+nP l vl+vvggl+l fl++ny lyvyaq++lPP+kkkPvskkk+kre+lkqGv++PGe Peaxi162Scf00005g00388.1 145 KDVEVKGFNPALTVLMVVGGLVLAFLIANYGLYVYAQRTLPPKKKKPVSKKKMKRERLKQGVSAPGE 211 679***************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 8.0E-5 | 146 | 211 | No hit | No description |
Pfam | PF04689 | 1.0E-35 | 147 | 211 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MAMYTTRGSS WKDKGVGGYN KKKPPMECDY CGLKNHTRDG CWKINGYLNE KKGRRKSNAN 60 NIVDNTDNKS VDGYVKQAPG YFFTQSQYEQ ILQLLSKEEA PLQDNTMANM AVLLLVNIAQ 120 FSESMDFEAD FDPPPSFDNV KNMAKDVEVK GFNPALTVLM VVGGLVLAFL IANYGLYVYA 180 QRTLPPKKKK PVSKKKMKRE RLKQGVSAPG E |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3174 | 22 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37120.1 | 2e-06 | S1FA-like DNA-binding protein |