PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00004g04521.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

SRS

Protein Properties

Length: 429aa MW: 44480.3 Da PI: 7.6645

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00004g04521.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218.8	1.2e-67	220	382	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsal 86 +a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerq + + + aa s+ +++++k++r +s++++++ Peaxi162Scf00004g04521.1 220 SSATCQDCGNQAKKDCPHKRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLMGTGTDVVAAGSSsqSTSSAKKPRLVNSQATTTA 304 5789*******************************************9988777666555443477888999999999* PP DUF702 87 sstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s+t++s+++++++++tss lP +v+++avf+cvrv+svddge+e+aYq++v igGhvfkG+LydqGlee Peaxi162Scf00004g04521.1 305 SHTSTSNTTPQRSFDTSSshqdasfkasLPGQVKAPAVFKCVRVTSVDDGEDEYAYQAVVRIGGHVFKGFLYDQGLEE 382 ************999******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.3E-62	221	381	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.5E-26	223	265	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.1E-29	333	380	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
FIAVVATARR LLQGSDSGTA FADWVTSSNS SAAAGIGDLS LGFTTAGGGN GSTAGGGGGN 60 GGGHSGVWSA SPSNNTTRQM QINYGLPHEM GMFVVTPASF HHHHQENSIN FDNLHHHHQS 120 INGSNISTSP TTNTSLGVGV GVGVIPLLTA TPLTNMVSFD DHQDLVGRNR GGTNDHSGGS 180 GFQFFSNQQQ NSPNYNKTSN IPSNFTSGGG NIGGGSISSS SATCQDCGNQ AKKDCPHKRC 240 RTCCKSRGFD CTTHVKSTWV PAARRRERQL MGTGTDVVAA GSSSQSTSSA KKPRLVNSQA 300 TTTASHTSTS NTTPQRSFDT SSSHQDASFK ASLPGQVKAP AVFKCVRVTS VDDGEDEYAY 360 QAVVRIGGHV FKGFLYDQGL EEGNKDNNNF PNLSDLHLGG GNGNDPSDLY AASTGGGLLG 420 GSNYGNPIN

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

FIAVVATARR LLQGSDSGTA FADWVTSSNS SAAAGIGDLS LGFTTAGGGN GSTAGGGGGN  60
GGGHSGVWSA SPSNNTTRQM QINYGLPHEM GMFVVTPASF HHHHQENSIN FDNLHHHHQS  120
INGSNISTSP TTNTSLGVGV GVGVIPLLTA TPLTNMVSFD DHQDLVGRNR GGTNDHSGGS  180
GFQFFSNQQQ NSPNYNKTSN IPSNFTSGGG NIGGGSISSS SATCQDCGNQ AKKDCPHKRC  240
RTCCKSRGFD CTTHVKSTWV PAARRRERQL MGTGTDVVAA GSSSQSTSSA KKPRLVNSQA  300
TTTASHTSTS NTTPQRSFDT SSSHQDASFK ASLPGQVKAP AVFKCVRVTS VDDGEDEYAY  360
QAVVRIGGHV FKGFLYDQGL EEGNKDNNNF PNLSDLHLGG GNGNDPSDLY AASTGGGLLG  420
GSNYGNPIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009796421.1	1e-163	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Refseq	XP_016458851.1	1e-163	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	6e-75	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2G2VN60	1e-174	A0A2G2VN60_CAPBA; Protein LATERAL ROOT PRIMORDIUM 1
STRING	XP_009604000.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	2e-68	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]