PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00004g00419.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HB-other
Protein Properties Length: 560aa    MW: 63403.5 Da    PI: 7.9133
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00004g00419.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.49e-172175357
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                              kR   t+ q+e+Le+l+e+++yps e +++LA++ gLte+q++ WF+ rR k+k+
  Peaxi162Scf00004g00419.1 21 KRIIKTRAQVEALEKLYEEHKYPSDELKADLADSSGLTEKQISGWFCHRRLKDKR 75
                              78999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-19375IPR009057Homeodomain-like
SuperFamilySSF466891.8E-151276IPR009057Homeodomain-like
PROSITE profilePS5007116.0011676IPR001356Homeobox domain
SMARTSM003895.1E-171880IPR001356Homeobox domain
CDDcd000861.27E-141975No hitNo description
PfamPF000462.0E-142175IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MEDLSEVHSE DDKGHTEKKF KRIIKTRAQV EALEKLYEEH KYPSDELKAD LADSSGLTEK  60
QISGWFCHRR LKDKRLSNGE IYANGRQDRS SGVIQDHGSG FRQDSCGSTK QVDDKKYDHR  120
EVESRRLTGP EFSTAEVTYD VGTHFRGKSN RMDDASSRSS SSLRNESFLQ NAESYDIATS  180
RYISQNLPTD YKGVKPKNGP SGYLKVKGQV ENAAITAVKK QLGRHYRLDG PPLGVEFDPL  240
PPGAFESSGA SPVNEPVPAC SPDMSNVYRR SNGYRSNSVT NSHDSDLDGS SYKRTKSAHP  300
EYCYNQKPER KSSEHNECPE WNSPSGMYEG SARKMTNSHD SDLDGSSFKR TKSARPEYCY  360
NQKPERKSSE HNEYPEWNSP SGMYEGSARK MTHNSRENCK FTAKHGRAEI RTSTGSSHGI  420
RSPYDGKVNG EQVKPRFPSH SEVSRKVVEK DHLDRRSEFK GSYYHNVGER ELPKIVEKDN  480
IMGNRTAVDE NTLVRVKVPR HNETRVFKRP MNEVPDHREY ARASAIGMPL QSNHLIRTAA  540
EMPPNYSEDE ETEDSSSFEG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018634553.10.0PREDICTED: uncharacterized protein LOC104120160 isoform X2
TrEMBLA0A1S4ACU00.0A0A1S4ACU0_TOBAC; uncharacterized protein LOC107796248
STRINGXP_009630181.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34362242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.14e-66HB-other family protein