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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00003g10415.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 662aa MW: 72581.3 Da PI: 7.0806 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23 | 1.4e-07 | 275 | 298 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++C+ f++ G C++Gd C +aHg Peaxi162Scf00003g10415.1 275 SSVPCPEFRK-GACQRGDMCEYAHG 298 5689******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 8.9E-18 | 9 | 153 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 4.04E-17 | 9 | 139 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 3800 | 10 | 40 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 2.2E-9 | 53 | 126 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 18.484 | 57 | 132 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.84E-15 | 57 | 135 | No hit | No description |
SMART | SM00248 | 0.034 | 57 | 87 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.663 | 92 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 9.2E-4 | 92 | 124 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 5.6E-5 | 93 | 108 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 5.6E-5 | 111 | 125 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 272 | 300 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-6 | 273 | 299 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.77 | 274 | 300 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-6 | 275 | 298 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.1E-5 | 306 | 336 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 27 | 308 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MNHQTVETED TFTSLLECAA NNEIDAFERW IERDLSSVHE VGLWYGRQKG SKQMVLEHRT 60 PLMVAAIYGS IDILVLILSL PGGDVNHSCG RDNSTALHCA ASGGSLNAAD AIKLLLEAGA 120 DPNFKDANGH RPRDVIVVSP KFHTMKSCLE NLLKTDAIGD CNLRLSIATS RSNSPPLSPS 180 PGNRSPSSAS DTTSSPRSAK SNDLPMHLTL EEKEYPIDPS LPDIKNSIYT TDEFRMFSFK 240 IRPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSSVPCP EFRKGACQRG DMCEYAHGVF 300 ECWLHPAQYR TRICKDGTEC NRRVCFFAHT QEELRPLYVS TGYVPSPRSN TSAANAIDFA 360 AARGLIPGSP SSVSVMSPSP FTPPMSPSAN GVSNMVGWPQ QNVPALHLPG SNLQSSRLCV 420 NANSSNRSVR PKTLTPSNLE DLFFAESSSP RYPEQALAQA VFSPTHSSAL FNQFQQQQAM 480 SSPINTKFSP KNADNRLLQA SFGVPSSRKM SPRGMEPISP MSSRVSILSR SDKQHQFRSL 540 SSRDLGSSAS AIVGSPSDTW SNWGTATGKP DWAVNTEELG KLRRSSSFEL ANNGEEPDLS 600 WVQSLVKEPP QEIKDKSASR VIGLTGAGAD INEGSTSISQ IEQLDQLGAW MEQMKLDQLI 660 AQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009781965.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A1U7X668 | 0.0 | A0A1U7X668_NICSY; zinc finger CCCH domain-containing protein 30-like | ||||
STRING | XP_009781965.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA883 | 24 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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