PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00003g04241.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bHLH

Protein Properties

Length: 318aa MW: 35259.8 Da PI: 6.5216

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00003g04241.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.4e-09	161	208	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a++L + +++++sLq Peaxi162Scf00003g04241.1 161 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 208 8***********************9....89999*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.15E-9	155	212	No hit	No description
SuperFamily	SSF47459	4.32E-15	155	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-15	157	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.634	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-7	161	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-9	163	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MEETAVGNSF TALLELPANQ AVELLVHSPE KLAVTELPYF NYPNPNPIPI PIFPSDIGLI 60 DRAAKYSVFA AAAAGNSPED NSTLSNSGSG LKSLLVKQEP LDCESPVVSN PTVNKKRKDR 120 EKKVKETSKK GKKSTKDTSE DDGEKLPYIH VRARRGQATD SHSLAERARR EKINARMKLL 180 QELVPGCNKI SGTAMVLDEI INHVQSLQRQ VEFLSMRLAA VTPRVDFNLD SLFAAERSGS 240 HVESNLPDMV MPPIWPEGQT SGNRNLYQHL WHYEGFQQPV WGRVEDNSSF VTPENSLLTY 300 DSSANSASLH PNQLKMEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	4e-61	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351217.1	1e-177	PREDICTED: transcription factor bHLH48-like
Swissprot	Q8VZ02	7e-76	BH048_ARATH; Transcription factor bHLH48
TrEMBL	M1AEN9	1e-175	M1AEN9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400021130	1e-176	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4029	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-67	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]