PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g03953.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 377aa    MW: 42825.6 Da    PI: 4.218
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g03953.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-05278303123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               y+Cp   C+k + + + L+ H+r+ H
  Peaxi162Scf00003g03953.1 278 YSCPyeGCDKAYIHEYKLNLHLRNmH 303
                               99*********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525407.08E-457249IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009317.5E-5514259IPR002182NB-ARC
PRINTSPR003643.9E-63449No hitNo description
Gene3DG3DSA:3.40.50.3003.3E-652168IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003643.9E-693107No hitNo description
PRINTSPR003643.9E-6185199No hitNo description
Gene3DG3DSA:3.30.160.601.3E-8273300IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.5E-5274308No hitNo description
PROSITE profilePS5015711.344278308IPR007087Zinc finger, C2H2
SMARTSM003550.0015278303IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280280303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEVGYITPPI TLEREDEVKA LLNQLVGGPK QLDVVTIVGM PGLCKIERYG VRSWCCVSQT  60
YDRKSVLMEI MRGLDKENTT TEESVLAAEI RRFLIRKRYL VVVDDLWGTD AWDDLRLIFP  120
DDNNGSRLVL TTRLDEMASY ASTNPHHLRH LTKEESYELL KKIVFGEESC PCELEEAGNE  180
IARSCAGLPL AVVLSAGLLA RGVKEVDYWN EVSQNLSSTL FHDVDWLMDV VELSYKTLPH  240
DLKPCFLYFG SFSEDEQISK CGCTSSAAYA PASSDRPYSC PYEGCDKAYI HEYKLNLHLR  300
NMHPGHFPDE NTKNAQSTGD NEMDEANLSI GKKPWPVKEE NYSEEDSEET EEERDDAGDG  360
WRYGENDEDD EETEEDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6s2p_N3e-4882522270NRC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0176946e-57AB017694.1 Nicotiana tabacum WREBP-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763119.11e-121PREDICTED: putative late blight resistance protein homolog R1C-3 isoform X1
RefseqXP_009763120.11e-121PREDICTED: putative late blight resistance protein homolog R1C-3 isoform X2
TrEMBLA0A1U7VLA11e-120A0A1U7VLA1_NICSY; putative late blight resistance protein homolog R1C-3 isoform X1
TrEMBLA0A1U7VMM11e-120A0A1U7VMM1_NICSY; putative late blight resistance protein homolog R1C-3 isoform X2
STRINGXP_009763119.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.26e-16C2H2 family protein