PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00003g03742.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 307aa MW: 33056.3 Da PI: 7.7958 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.6 | 6.6e-11 | 134 | 159 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k e Cr++ +G C++G++C+F Hg+ Peaxi162Scf00003g03742.1 134 KSEVCRRWEDSGSCRFGSKCRFVHGK 159 7899********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.0E-6 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.685 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-11 | 134 | 164 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-8 | 134 | 159 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-7 | 134 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MEFFYGSSNN DSQSSNVSPI SRNLINRGRF YPSVLDPYAS SDSSVSPLVR YFHSSSSDSP 60 KHWSSSGSRG SSGSGGGFRV PLGSIENIES PFRTPVKVEE DVVVMDGILV GPKFGGKNKS 120 SPLSSTSDYS GENKSEVCRR WEDSGSCRFG SKCRFVHGKE DIRSTAFANR NQSEVQISSR 180 SHSSGSCSYG PRGRFVHQQV QSGANPTVAA AAMATPTARI VSVKDKEPPS SGSSTTSTST 240 VAISGYTDWC PLDDNIEVFL PGSAEKCTSR EDVDAHIQSV LYGHTGRKRL SVFIDLVRGE 300 TCSGWEN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019242910.1 | 2e-94 | PREDICTED: zinc finger protein 36, C3H1 type-like 3 | ||||
Refseq | XP_019242911.1 | 2e-94 | PREDICTED: zinc finger protein 36, C3H1 type-like 3 | ||||
Refseq | XP_019242912.1 | 2e-94 | PREDICTED: zinc finger protein 36, C3H1 type-like 3 | ||||
Refseq | XP_019242913.1 | 2e-94 | PREDICTED: zinc finger protein 36, C3H1 type-like 3 | ||||
Refseq | XP_019242919.1 | 2e-94 | PREDICTED: zinc finger protein 36, C3H1 type-like 3 | ||||
Refseq | XP_019242926.1 | 2e-94 | PREDICTED: zinc finger protein 36, C3H1 type-like 3 | ||||
Refseq | XP_019242932.1 | 2e-94 | PREDICTED: zinc finger protein 36, C3H1 type-like 3 | ||||
TrEMBL | A0A1J6J4N2 | 5e-93 | A0A1J6J4N2_NICAT; Uncharacterized protein | ||||
STRING | XP_009589110.1 | 2e-90 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7765 | 18 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-06 | C3H family protein |