PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g02825.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 123aa    MW: 13819.1 Da    PI: 10.3955
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g02825.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.55.3e-211657243
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                              +ie k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+ 
  Peaxi162Scf00003g02825.1 16 KIEMKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPA 57
                              68889999********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-24766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.628759IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-22761IPR002100Transcription factor, MADS-box
CDDcd001204.24E-26859No hitNo description
PRINTSPR004042.6E-14929IPR002100Transcription factor, MADS-box
PfamPF003193.4E-221659IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MAKKPSMGRQ RIKIAKIEMK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPARKE  60
SMEDLKKNVT TQATKLMIHE NNNTSSFLAM NGVGIFDNYD LKPVIAASSN PHNHTFGYDH  120
GFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231378.16e-33agamous-like MADS-box protein AGL62
RefseqXP_015082437.16e-33agamous-like MADS-box protein AGL62
TrEMBLA0A2G2W6A26e-32A0A2G2W6A2_CAPBA; Uncharacterized protein
STRINGPGSC0003DMT4000948162e-32(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-24AGAMOUS-like 62