PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g00374.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family Trihelix
Protein Properties Length: 379aa    MW: 43729 Da    PI: 8.114
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g00374.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix712.1e-22102188184
                  trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyf 82 
                               rWt+++v++Li+a+++++e++ ++    kk++W+++s++m++rg ++sp+qC++k+++lnk++k+++++ +++t + ++ + ++ 
  Peaxi162Scf00003g00374.1 102 RWTDEMVKLLITAVSYIGEDVWSNGmfPKKGKWRAISNVMADRGPHVSPQQCEDKFNDLNKKFKRLNDILGRGTaCSVVANPALM 186
                               8*****************9999865459********************************************9636666555555 PP

                  trihelix  83 dq 84 
                               + 
  Peaxi162Scf00003g00374.1 187 EM 188
                               44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.481100161IPR017877Myb-like domain
PfamPF138378.2E-21100215No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MQVNHQQSNS PNQGPGAEMQ HALEAATSFG HRNVPDMNQQ VLSPDAMETS RLNMYAAYNE  60
RSDAVEEVIA SSEEKQPVVY RRTRWRGKMI KEKQPVVYSR MRWTDEMVKL LITAVSYIGE  120
DVWSNGMFPK KGKWRAISNV MADRGPHVSP QQCEDKFNDL NKKFKRLNDI LGRGTACSVV  180
ANPALMEMMD LTPDVQEEVK KLLSSKQLFY KEMCSYNNQN RLFLPDDSEL QQSVLLALKR  240
KDMDEPEFAV QDKPAKRMIV GEERGSNMVC ASLNSITNSV PNVLNLNSNG IHDSAKNEEA  300
ETLQKEQEIL HRLLQLKEQK LQIEAQILEL EKQRYECLRF RSEKDRELKK LKLDNKAMKL  360
ENEKFAIRIK RCEASFLKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251125.10.0PREDICTED: uncharacterized protein LOC109230045
TrEMBLA0A1J6IP690.0A0A1J6IP69_NICAT; Uncharacterized protein
STRINGXP_009798603.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125851620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.15e-61