PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00003g00267.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 27615.2 Da PI: 9.5062 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.00098 | 100 | 122 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+ksF + L H +H Peaxi162Scf00003g00267.1 100 YKCNVCNKSFHSYQALGGHKASH 122 9*********9988888887776 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0013 | 152 | 174 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k+Fs+ L H r+H Peaxi162Scf00003g00267.1 152 HECSICHKCFSSGQALGGHKRRH 174 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.8E-4 | 96 | 124 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.44E-7 | 96 | 126 | No hit | No description |
SMART | SM00355 | 0.0065 | 100 | 122 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.8E-13 | 100 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.575 | 100 | 127 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 102 | 122 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.22E-5 | 149 | 176 | No hit | No description |
SMART | SM00355 | 0.4 | 152 | 174 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 9.0E-10 | 152 | 176 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.577 | 152 | 174 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 154 | 174 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MTLETLKSST PKTSKPTIPL PPKPINDAID IHKRKRSKRP RIETPPSEKE FLALCLIMLA 60 RSGGKNPTTT PTTITNEPLQ VQEPINKPLQ VQEPINEQSY KCNVCNKSFH SYQALGGHKA 120 SHRNKNLSTT TVSYDDTNPS TSNSLNPSGR FHECSICHKC FSSGQALGGH KRRHYEGNLG 180 GGVSRGDTVI SSEGGGSAVI RRDFDLNLPP SPELTLGMSV DCERKSQLSG EQEVESPMPT 240 KKPRLAFRID GN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | PETZFDB3 | 0.0 | D26085.1 Petunia x hybrida gene for zinc-finger DNA binding protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018625967.1 | 3e-91 | PREDICTED: zinc finger protein ZAT10-like | ||||
TrEMBL | Q40898 | 1e-175 | Q40898_PETHY; Zinc-finger DNA binding protein | ||||
STRING | XP_009599610.1 | 1e-90 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA735 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 2e-42 | salt tolerance zinc finger |