PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00001g00283.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 757aa MW: 86810.6 Da PI: 6.5035 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.5 | 1.4e-20 | 59 | 152 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkl 81 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t + Peaxi162Scf00001g00283.1 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSEDGKLHRNRKSSRCGCQAFMRIVKRAdlnVPEWRITGF 143 6***************999887455667********************9*******************99888676789****** PP FAR1 82 eleHnHela 90 ++ HnHel+ Peaxi162Scf00001g00283.1 144 SNVHNHELS 152 *******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-17 | 59 | 152 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.1E-23 | 275 | 366 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.2 | 550 | 586 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 6.9E-8 | 558 | 584 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.7E-6 | 561 | 588 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 757 aa Download sequence Send to blast |
MPEITGIAKE TSDNGTDSSQ DDIGTVEEMP EESILSRQTS VSLVPFIGQR FISQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSEDGKL HRNRKSSRCG 120 CQAFMRIVKR ADLNVPEWRI TGFSNVHNHE LSKSTEMQLL PAYCTISADD KSRICMFAKA 180 GMSVRQMMRL MELEKGVKLG CLPFTEVDVR NLLQSFRNVD QDNDPIDLLK MCKEMKDKDP 240 NFKYDYKIDC NNRLEHIAWS YASSMRLYEA FHDAIVFDTT HRLDTYDMIL GIWIGVDNHG 300 MHCFFGCVLL RDENLQSFSW ALKTFLGFMN GKAPGTILTD QNLWLKEAIA TEIPRAKHAF 360 CIWHIISRFS DWFSTLLGSH YDNWKAEFHR IYNLHSIEEY EEGWKDMVET YRLDGNKHIV 420 SLYALRSYWA LPFLRSYFFA GMTSTFQSET INTYIQRFLS AQSALDNFVE QVARVLDAKG 480 QAGEHKVQRK VQKVPLKTGS PIESQCATVL TPYAFSKLQD ELVLAPQYAS LMVDESYFIV 540 RHHTEMDGGY KVLWVPHDEF ISCSCHTFEF TGILCRHVLR VLSTNNCFHI PDQYLPMRWR 600 EYNSSLAKPT LFTLPSDHTG KVHLLQSMIS TLITESVETE EHLNVVCDEV STVLSRIKGF 660 PTASNGGNAI AYESPSDSLI LAEVEDSEGN GQSFTCNPHE CIILAKLKER GSRDELDRYR 720 KRRRFCIPCC GQYGHDANDC PMMEGEDLDE DRLGFLQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 719 | 723 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009599705.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11-like | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A2G2ZVM3 | 0.0 | A0A2G2ZVM3_CAPAN; Protein FAR1-RELATED SEQUENCE 11 | ||||
STRING | XP_009599705.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13535 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Publications ? help Back to Top | |||
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