PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00000g00481.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NAC

Protein Properties

Length: 290aa MW: 32663.6 Da PI: 9.8776

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00000g00481.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.4	1.2e-31	10	83	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk + + +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Peaxi162Scf00000g00481.1 10 GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVIST-QGKKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 83 689*******************************99999.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.976	1	106	IPR003441	NAC domain
SuperFamily	SSF101941	9.94E-42	5	107	IPR003441	NAC domain
Pfam	PF02365	5.6E-15	13	83	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MTSRGKAIFG EKEWYFFSPR DRKYPNGSRP NRVAGSGYWK ATGTDKVIST QGKKVGIKKA 60 LVFYVGKAPK GTKTNWIMHE YRLIEPSRKT GSSKLDEWVL CRIYKKNSSG QKPQVSGLQS 120 KEYSHGSSTS SSSQFDDMLE SLPEMDDRIQ RLNSLKPFQQ GERLNLERLD SANFDWAILA 180 GLKPMPELGP ATQGPGVPSQ GLVNNIHNHN SNNNMNFLND VYVQPTNFRG ITKVENVVDE 240 EVESGIRNQR FDKSGYFQQN VNGFSQTYTN AVDQFTIQCP NQTLNLGFGQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-67	6	112	68	174	NAC domain-containing protein 19
3swm_B	1e-67	6	112	68	174	NAC domain-containing protein 19
3swm_C	1e-67	6	112	68	174	NAC domain-containing protein 19
3swm_D	1e-67	6	112	68	174	NAC domain-containing protein 19
3swp_A	1e-67	6	112	68	174	NAC domain-containing protein 19
3swp_B	1e-67	6	112	68	174	NAC domain-containing protein 19
3swp_C	1e-67	6	112	68	174	NAC domain-containing protein 19
3swp_D	1e-67	6	112	68	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269\|PubMed:25005917}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269\|PubMed:25005917}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001233972.1	1e-154	jasmonic acid 2
Refseq	XP_009618124.1	1e-154	PREDICTED: NAC domain-containing protein 72-like
Refseq	XP_016440048.1	1e-154	PREDICTED: NAC domain-containing protein 72-like
Swissprot	Q9SQL0	1e-155	JA2_SOLLC; NAC domain-containing protein JA2
TrEMBL	A0A1S3XJF8	1e-153	A0A1S3XJF8_TOBAC; NAC domain-containing protein 72-like
STRING	Solyc12g013620.1.1	1e-154	(Solanum lycopersicum)
STRING	XP_009618124.1	1e-153	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3122	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.3	2e-81	NAC family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326]