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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Peaxi162Scf00000g00252.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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| Family |
TCP |
| Protein Properties |
Length: 416aa MW: 45483.2 Da PI: 6.5949 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peaxi162Scf00000g00252.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 109.6 | 4.5e-34 | 23 | 146 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssss 69
g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++ +
Peaxi162Scf00000g00252.1 23 GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELEELppwkptigpientnfdqeK--- 104
89*************************************************************9888877655443222220... PP
TCP 70 aseceaesssssasnsssg..........................k 89
++++++ s++++ + +
Peaxi162Scf00000g00252.1 105 ----KQQEENFSTQQNDVNvslvdsiagpsskremimlgnesahsS 146
....222222333323233455555555433333333322222220 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 416 aa
Download sequence Send
to blast |
MGLKNSGGEI VEVQGGHIVR SIGRKDRHSK VCTAKGPRDR RVRLSAHTAI QFYDVQDRLG 60
YDRPSKAVDW LIKKAKAAID ELEELPPWKP TIGPIENTNF DQEKKQQEEN FSTQQNDVNV 120
SLVDSIAGPS SKREMIMLGN ESAHSSGNNA NARFMPQSLD SDTIADTIKS FFPMGGSSEG 180
SSSAAMQFHN FQESNLLSRS NSQSQDLRLS LQSLQDPILL HHQNQQAQHH NHSADHTEEQ 240
VQTHFQASNF FHGTPLGFDA SGWSEHQQQP VELGRMQRLA ATRAGGDTGI ALGGGAVTGG 300
GGYLFNSQPA PPLIQQFFTQ NQFFSQRGPL QSSYSPSIRA WIDPSAIAIA TADPIYHHQH 360
HQAVLPMYSA SIPGIGFASE LGGFSGFRIP ARIQGDIEEH DGISDKPSSA SSDSRH
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC209584 | 1e-107 | AC209584.1 Solanum lycopersicum DNA sequence from clone LE_HBa-21L2 on chromosome 12, complete sequence. |
| GenBank | EF091574 | 1e-107 | EF091574.1 Solanum lycopersicum SlTCP3 mRNA, complete cds. |
| GenBank | GQ496321 | 1e-107 | GQ496321.1 Solanum lycopersicum TCP transcription factor 3 (TCP3) mRNA, complete cds. |
| GenBank | HG975451 | 1e-107 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
| GenBank | HG975524 | 1e-107 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
| Publications
? help Back to Top |
- Schommer C, et al.
Control of jasmonate biosynthesis and senescence by miR319 targets.
PLoS Biol., 2008. 6(9): p. e230
[PMID:18816164] - Ju Y, et al.
Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments.
Plant Cell, 2016. 28(9): p. 2131-2146
[PMID:27468890] - Challa KR,Aggarwal P,Nath U
Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis.
Plant Cell, 2016. 28(9): p. 2117-2130
[PMID:27597774] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth.
Elife, 2017.
[PMID:27710768] - Li J, et al.
RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis.
J. Exp. Bot., 2016. 67(22): p. 6473-6480
[PMID:27838638] - Sun X, et al.
Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor.
Plant Biotechnol. J., 2017. 15(10): p. 1284-1294
[PMID:28233945] - Kubota A, et al.
TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis.
PLoS Genet., 2017. 13(6): p. e1006856
[PMID:28628608] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development.
Plant Physiol., 2017. 175(2): p. 874-885
[PMID:28842549] - Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
Plant Physiol., 2018. 176(2): p. 1694-1708
[PMID:29133375] - Vadde BVL,Challa KR,Nath U
The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana.
Plant J., 2018. 93(2): p. 259-269
[PMID:29165850] - Challa KR,Rath M,Nath U
The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways.
PLoS Genet., 2019. 15(2): p. e1007988
[PMID:30742619]
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