PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042500.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 313aa    MW: 34961.9 Da    PI: 10.0524
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042500.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.35.6e-22250301359
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++p     C  +gCp++k+ver+ edp+++++tYeg+H+h+
  Pbr042500.1 250 DDYSWRKYGQKPIKGSPYPS----C-VRGCPARKHVERCLEDPNMLVVTYEGNHQHP 301
                  99***************995....4.78****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.2E-16204246IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.2E-23235302IPR003657WRKY domain
PROSITE profilePS5081121.769243303IPR003657WRKY domain
SuperFamilySSF1182903.79E-19246302IPR003657WRKY domain
SMARTSM007741.1E-24248302IPR003657WRKY domain
PfamPF031061.6E-17250301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MERESGVCLS MNPGLDFRIH EVAQSSLKHA QRLFGCISEK KHKRSAQEVS LVAQDAVNEF  60
RKLLTLLDGS ILSNQKRIRR GPLPESRGIN QVELLESHQP CLGFRQLFSN THQSDHAAAN  120
VIRSNGFSMG RERKPSLALQ QGHCETSVVL PNNLIMGLNQ FSQKPSTSLI SMDGSSINTQ  180
TRMIHYSSSE LFASQDSDSM FSSKKKCEEA STRCLASTGG CHCSKRRKLR IKRRIRVPAV  240
SNKLADIPPD DYSWRKYGQK PIKGSPYPSC VRGCPARKHV ERCLEDPNML VVTYEGNHQH  300
PRFTFQAPSV AI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-15236300271WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229235RIKRRIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042500.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340917.10.0PREDICTED: probable WRKY transcription factor 7
TrEMBLA0A498JPD30.0A0A498JPD3_MALDO; Uncharacterized protein
STRINGXP_009340917.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144241318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-42WRKY DNA-binding protein 21