PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr042477.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 72aa MW: 8286.49 Da PI: 6.5222 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 61.2 | 3.3e-19 | 9 | 56 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++++ePw+L++ Pbr042477.1 9 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVIREVDLNQMEPWELQA 56 69****************************.99**************83 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-18 | 7 | 58 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 19.182 | 9 | 71 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-9 | 10 | 52 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
MANSSSGGVP PGFRFHPTDE ELLHYYLKKK VSFQKFDMEV IREVDLNQME PWELQALQSF 60 LINNKLETGK K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr042477.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210382 | 6e-44 | AC210382.1 Populus trichocarpa clone POP018-P22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009347397.1 | 2e-32 | PREDICTED: protein BEARSKIN2-like | ||||
Swissprot | Q9SV87 | 6e-29 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A314ZLB8 | 1e-33 | A0A314ZLB8_PRUYE; Protein BEARSKIN2 | ||||
STRING | XP_009347397.1 | 6e-32 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11433 | 17 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 2e-31 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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