PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr042464.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRAS | ||||||||
Protein Properties | Length: 245aa MW: 27149.2 Da PI: 10.7345 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 29 | 1.3e-09 | 102 | 161 | 192 | 257 |
GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257 + ++++ gEa+aVn+ + ++ +++++l++ vL++vk+lsPk+vv ++ + +++ +F +r Pbr042464.1 102 DVIQTNDGEAVAVNFPI--WSTSNQPAALPN----VLRFVKQLSPKIVVSLDRGCGRSDLPFPQRT 161 4578889********99..666678999999....***************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF56176 | 2.86E-6 | 1 | 31 | IPR016166 | FAD-binding, type 2 |
Pfam | PF03514 | 4.6E-7 | 102 | 161 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0016614 | Molecular Function | oxidoreductase activity, acting on CH-OH group of donors | ||||
GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGEDLFWAIR GGGGGSFGVI LWWKIKLVPV PETVTVFTVP KTLETGATKV LHKWQQVAAT 60 KLDEDLFMRV VIQVSEGSKT GNRTVTTLYQ AQFLGGADRL LDVIQTNDGE AVAVNFPIWS 120 TSNQPAALPN VLRFVKQLSP KIVVSLDRGC GRSDLPFPQR TLQPFLPRIL LQQSPTSDRS 180 PNGGRSRAMS PAVVSGCLAE RTHGTYPSRT HVPCRTLSLR HGKDIQRTWT PHKRHFWCEQ 240 RQTP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ud8_A | 5e-30 | 1 | 194 | 225 | 425 | FAD-BINDING AND BBE DOMAIN-CONTAINING PROTEIN |
4ud8_B | 5e-30 | 1 | 194 | 225 | 425 | FAD-BINDING AND BBE DOMAIN-CONTAINING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr042464.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009347389.1 | 0.0 | PREDICTED: uncharacterized protein LOC103939060 | ||||
TrEMBL | M5WPC0 | 2e-54 | M5WPC0_PRUPE; Uncharacterized protein | ||||
STRING | XP_009347389.1 | 0.0 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45160.1 | 2e-12 | GRAS family protein |