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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr042296.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 497aa MW: 54976.4 Da PI: 7.788 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3.1e-15 | 160 | 206 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT Ed +l ++vkq+G + W+ Ia+t+ gR +kqc++rw+++l Pbr042296.1 160 KGQWTDGEDRKLMRLVKQYGVRKWAQIAETLE-GRVGKQCRERWHNHL 206 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 212 | 254 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +lvda++ G++ W+ Ia++++ gRt++ +k++w+ Pbr042296.1 212 KDSWTEEEEAILVDAHTGVGNR-WAEIAKRIP-GRTENAIKNHWN 254 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.373 | 155 | 210 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.15E-28 | 158 | 253 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-13 | 159 | 208 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-27 | 161 | 214 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 4.0E-18 | 163 | 220 | No hit | No description |
CDD | cd00167 | 5.51E-12 | 163 | 206 | No hit | No description |
SMART | SM00717 | 1.3E-15 | 211 | 259 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.203 | 211 | 261 | IPR017930 | Myb domain |
CDD | cd00167 | 2.09E-11 | 214 | 257 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-20 | 215 | 259 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MEGDRGGGGG GGDLGVYGFR NNTQHHSIYK TGPPLTAIDR FLWGSHQSQN NASNKDHQKV 60 VSSNGLSGFA SFGGGGAIVG HEAAASWPRN YSATTNHLQE PSFVDEFFVG QGEALMMSWF 120 QEQNPNTTGC FREEGRVSER NCKAVGQRAK KGLTAATIIK GQWTDGEDRK LMRLVKQYGV 180 RKWAQIAETL EGRVGKQCRE RWHNHLRPNI KKDSWTEEEE AILVDAHTGV GNRWAEIAKR 240 IPGRTENAIK NHWNATKRRQ NSRRKNKQTE GKNGNNKKPQ SSILQNYIRS KNLIINNNSN 300 ISSSTPTSSS TLSHEDPSKT YLNILVTEPS DQSTTSNCCD SPLNLADSLY NDDELVFMQN 360 FFTNNPHNHP QQPSNSTENN VGLIVSPMEA SQNPNIYNFS SSIINPTTTT TTTSTPSPTT 420 PTPLYSDLYL SYLLNGAANS SSYNPNDHHP HLGFYNTTME YLVSHDHHHH LQAAASASNE 480 RREMDLIEMG SASQGT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-43 | 158 | 260 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-43 | 158 | 260 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00567 | DAP | Transfer from AT5G58850 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr042296.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009374342.1 | 0.0 | PREDICTED: transcription factor MYB35 | ||||
TrEMBL | A0A498KA82 | 0.0 | A0A498KA82_MALDO; Uncharacterized protein | ||||
STRING | XP_009374342.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4129 | 31 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11050.1 | 8e-55 | myb domain protein 64 |