PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042193.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 712aa    MW: 77674.5 Da    PI: 5.8707
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042193.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.1e-07277297526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ GtC+ Gd C +aHg
  Pbr042193.1 277 PCPEFRK-GTCRQGDDCEYAHG 297
                  8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.02E-1126151IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-1229151IPR020683Ankyrin repeat-containing domain
PfamPF127965.3E-768137IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029711.74573143IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01873103IPR002110Ankyrin repeat
CDDcd002041.94E-675146No hitNo description
PROSITE profilePS500889.564108143IPR002110Ankyrin repeat
SMARTSM002481.2108140IPR002110Ankyrin repeat
SMARTSM003564.1E-5272298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.925277299IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4277297IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944307331IPR000571Zinc finger, CCCH-type
SMARTSM0035631307330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MCSGSKRKPS STDMVMEREK QEGMQYSFSI LLELAACDDL EGFKRAVEEE GHDVDEASYW  60
YGRLIGSKKL GFEERTPLMI AAMFGSKNVL NYILQLCLVN VNRSCGSDRA TALHCAVAGG  120
SAASAEVVKL LLAASADSGA LDANGNQAGD LITSAYGSSF NSKKKALEGM LKGVPSIDEP  180
FDFSEQMINE TEAQEQKEIT TPRASKDGTE RKEYPVDLSL PDIKNGIYST DEFRMYTFKV  240
KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGTCRQGD DCEYAHGIFE  300
CWLHPAQYRT RLCKDETGCT RRVCFFAHKP EELRPLYAST GSAVPSPRSF SASGASLDMG  360
SITPLSLNSP LNSPSMMIPP TSTPPMTPTG PSSPRSGFMW QNNPNFAPPT LQLPGSRLKS  420
TLSARDMDFD IEMLSLEKDR RRQQRLIDEI SGSPSNWNNS LSPALPFSAS GNRTGELNSL  480
GGVNPTNLDD IFGSVEPAIL PQFNGLSRDS TASQLHSPTG MRQNMNLQAR PSYSASLSSS  540
PGRASSMFGV DASSAAAVFS SRSAAFANRS QSFIERSAGN RNTGVSSSAD FGTLKPSNLS  600
DWGSPGGKLD WGMQGEELNK LRKSASFGIR SNGSSFPTAS STTPTHGDEP DVSWVQSLVK  660
DGPQPSQQRG QFGFEDQQQQ QQQQHNPNNG GPEMLPAWVE QLYFEQEQMV A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042193.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347250.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A498KA480.0A0A498KA48_MALDO; Uncharacterized protein
STRINGXP_009347250.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-179C3H family protein