PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042036.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 476aa    MW: 51624.8 Da    PI: 5.5295
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042036.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY46.76.5e-152602982259
                  EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Pbr042036.1 260 KGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 298
                  68*****998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.31E-14250300IPR003657WRKY domain
SMARTSM007748.6E-17252299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-14260300IPR003657WRKY domain
PROSITE profilePS5081119.531260300IPR003657WRKY domain
PfamPF031065.0E-13260298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MPTTRMENFQ GDLTDILRAG TTTATVGADP SDHQEPYTDS WHFPYDPMIF PSSSSAMEEE  60
EETKDNFGDP FLSYMRDPLL NELDISSSSL FSSPNCTARA EEGVTTTTFG SGGDGSHHVL  120
SLGHHNHQSG GVVVDGDPIK RPYNIFSRML QISPSAKVPV SPCDSPVMGA SVSSSTSGVK  180
TSSASAAMVA SDMIINGNSS SAAKGCLLEN TGMQISSPRN PGIKRRKSQA KKVVCIPAPA  240
AANSRPTGEV VPSDLWAWRK GYYRCSSSKG CSARKQVERS RTDPNMLVIT YTSEHNHPWP  300
TQRNALAGST RSQPSKKGGA AALKISPDSS HQPHLKPTSP TKEEQNENVN DNDDNHMSTT  360
VITAGSASTV KEEFEDIEKQ LELDHHHQQL GFAYRPSMPD EQSNQSHHPD DFFADLGEIE  420
ADPLNLLFSQ CFSVDEQQQK GGKAAEPLDP FNLLDNWSGD HNTNNTSFAE AKRRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-15228301380Disease resistance protein RRS1
5w3x_D1e-15228301380Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042036.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494245e-49AC149424.1 Populus trichocarpa clone Pop1-011N15, complete sequence.
GenBankAC1494255e-49AC149425.1 Populus trichocarpa clone Pop1-041F22, complete sequence.
GenBankAC1494265e-49AC149426.1 Populus trichocarpa clone Pop1-053A03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362177.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A498JUJ10.0A0A498JUJ1_MALDO; Uncharacterized protein
STRINGXP_009362177.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.12e-71WRKY DNA-binding protein 14