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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pbr042005.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
| Family |
C2H2 |
| Protein Properties |
Length: 356aa MW: 40462.2 Da PI: 8.3933 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pbr042005.1 | genome | CPETR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 22 | 4.2e-07 | 20 | 41 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
+C+ Cg +F+ + +Lk+H+++H
Pbr042005.1 20 TCEECGATFKKPAHLKQHMQSH 41
7*******************99 PP
|
| 2 | zf-C2H2 | 18.7 | 4.7e-06 | 77 | 101 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
y C+ dC sF+rk++L+rH+ H
Pbr042005.1 77 YICSvdDCRSSFRRKDHLNRHLLQH 101
89*******************9887 PP
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| 3 | zf-C2H2 | 13 | 0.00032 | 145 | 169 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
++C+ Cgk+F s L++H ++H
Pbr042005.1 145 HVCQeiGCGKVFLFASKLRKHESSH 169
79********************997 PP
|
| 4 | zf-C2H2 | 15.1 | 6.8e-05 | 237 | 261 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23
kC+ C +Fs+ksnL++H + H
Pbr042005.1 237 KCSykGCLHTFSTKSNLTQHVKAvH 261
688889**************99877 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 16 | 42 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 5.9E-8 | 18 | 41 | No hit | No description |
| SMART | SM00355 | 0.0017 | 19 | 41 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 11.78 | 19 | 46 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13894 | 0.0012 | 20 | 41 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 21 | 41 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 5.9E-8 | 72 | 101 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 5.0E-9 | 74 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 10.471 | 77 | 106 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0017 | 77 | 101 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 6.9E-4 | 104 | 128 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 8.44E-5 | 104 | 132 | No hit | No description |
| PROSITE profile | PS50157 | 10.679 | 106 | 136 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.013 | 106 | 131 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 108 | 131 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 9.7E-7 | 141 | 169 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 9.99E-5 | 141 | 171 | No hit | No description |
| SMART | SM00355 | 0.13 | 145 | 169 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.827 | 145 | 174 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 147 | 171 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 9.6 | 177 | 202 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 179 | 202 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 45 | 205 | 226 | IPR015880 | Zinc finger, C2H2-like |
| Gene3D | G3DSA:3.30.160.60 | 3.3E-5 | 217 | 258 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 5.8E-8 | 218 | 273 | No hit | No description |
| SMART | SM00355 | 0.0028 | 236 | 261 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 12.071 | 236 | 266 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 238 | 261 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 260 | 290 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 8.8 | 267 | 293 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 269 | 293 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 356 aa
Download sequence Send
to blast |
MDMAKEAGGE GEGEKEKCNT CEECGATFKK PAHLKQHMQS HSLEELQNAR AFDLNGPVTG 60
GRPPVKLHQA SLNHRPYICS VDDCRSSFRR KDHLNRHLLQ HQGKLFKCPI ENCNRGFVCQ 120
GNMSRHVKEL HSEDGTYVGR GQKQHVCQEI GCGKVFLFAS KLRKHESSHV HMDSVEAFCS 180
EAGCMKYFTN DQCLKDHILS CHQHVMCEIC GSKKLNRNIK RHLLTHKGGV PSVERIKCSY 240
KGCLHTFSTK SNLTQHVKAV HLEDKPFACS FSGCGMRFAY KHVRDNHEKT RCHVYAYGDF 300
VEADEQFQSR PRGGLKRKCP TIEMLLRKRV TPPDQLALEP EYLSWLLLQD AEDEN*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
