![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr041858.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 454aa MW: 49485 Da PI: 7.5222 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.6 | 7.2e-30 | 203 | 262 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a Cpv+k+v+r+ ed +++++tYeg+Hnh+ Pbr041858.1 203 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApACPVRKQVQRCYEDMSILITTYEGTHNHS 262 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-31 | 188 | 264 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.8E-27 | 195 | 264 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.749 | 198 | 264 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-35 | 203 | 263 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-26 | 204 | 261 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 454 aa Download sequence Send to blast |
MPNSNSRSSA EKKVDQSVGY QEVHSRVLRK ESELDNAKAE MGEVREENAR LKMTLNHMEK 60 DYQSLQLRFF DILRQEASKK AVNIAGDRII EEPEQLLSLC LGRSPREPTS DRETTTSSNF 120 TKLVQVDDGE DNLKANLTLG LGSNETSLEE PNKDRAEAGS GDASSSLSKT PKTMRNEDGE 180 PPTLVNAKRA RVSVRTRCDT PTMNDGCQWR KYGQKTAKGN PCPRAYYRCT VAPACPVRKQ 240 VQRCYEDMSI LITTYEGTHN HSLPFTASYL ASTTSAAASM LLSGSSTSHP GFGSTSTLLN 300 GSEFSAFDNS RTQLYMPKSS HPLLPTITLD LTASPPSSST FPSSLSFCSP SDSNIFPTRW 360 DNGYLKHGLP PFDKAQVGSF NLGKPLQEYF HQNYAEKIHQ ASSQVSLTES LTKAITSDPN 420 FKSVVAVALS SLVGSGGGAT HRSQGEGGER INT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 190 | 264 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr041858.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009347066.2 | 0.0 | PREDICTED: probable WRKY transcription factor 72 | ||||
Swissprot | Q9LXG8 | 6e-95 | WRK72_ARATH; Probable WRKY transcription factor 72 | ||||
TrEMBL | A0A498HIZ3 | 0.0 | A0A498HIZ3_MALDO; Uncharacterized protein | ||||
STRING | XP_009347066.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15130.1 | 8e-83 | WRKY DNA-binding protein 72 |