PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041554.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 706aa    MW: 78326.2 Da    PI: 6.3148
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041554.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.33.7e-1323407041374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets..eknsseelaalklfsevsPilkfshl 96 
                  l +lLl cAeav+++d  la+++L +l+  ++p gd+mqR+a++ft AL+arla + ++  +a +p++ s  + ns e l+++++ ++++P++kf+h+
  Pbr041554.1 340 LLHLLLVCAEAVAKEDYMLARRYLHHLNRVVTPLGDSMQRVASCFTDALSARLAATLTTNPRASAPQPFSpfPPNSLEILKIYQIVYQACPYIKFAHF 437
                  579***************************************************966555555544444411456*********************** PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      e+++etg+ L+++A +l+vpfef++ v ++ledl+++++
  Pbr041554.1 438 TANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----CIEAVKETGRCLTELALSLHVPFEFHA-VGEQLEDLKPHMF 530
                  *****************************************************....***************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  + + gEalaVn v +lhr++       ++  ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++
  Pbr041554.1 531 NRRIGEALAVNTVNRLHRVP------VNCLGNLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAP 622
                  *******************9......344557****************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ei+n+vacegaer+erhe+l kWr+ +e+ GFk+v+ls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  Pbr041554.1 623 EIRNIVACEGAERTERHERLDKWRKVMESKGFKSVALSANAVTQSKILLGLYSCDGYRMTEDNGCLLLGWQDRSIMAASAWR 704
                  *********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.569314684IPR005202Transcription factor GRAS
PfamPF035141.3E-129340704IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MMINTHCGSM GSIKSENSCS SDLRPPSPTE STTMSMSISE SKKITIPPSS ELDQQSTLTP  60
PSLNFPTLKF ELEDVEVQSP DHSIWESMFS EQFDTDFMVL SPVPNNMPNS AQIGGSATHQ  120
NYNYNYAQSM QGQSLSGSSS PRFSPHLGAF SSTHNPKGKG LSPLRRVFNS PVNQYMEPAD  180
QNTHSLPVPV SIEDFLDDYQ RDGFIAAFPT TTSSKISGSS SQSYNHHDHL PASSTVPSAT  240
LDCVPMYNSS RFSRSASEAS LVTAGNSQLT QERSSGSGYQ QMSGAPLSQQ LQQERMQEKQ  300
QQPQKQHHHQ PQQQQNLHYN MMAPAIPMAH EQEQDSGLQL LHLLLVCAEA VAKEDYMLAR  360
RYLHHLNRVV TPLGDSMQRV ASCFTDALSA RLAATLTTNP RASAPQPFSP FPPNSLEILK  420
IYQIVYQACP YIKFAHFTAN QAIFEAFESE ERVHVIDLDI LQGYQWPAFM QALAARPGGA  480
PFLRITGVGP CIEAVKETGR CLTELALSLH VPFEFHAVGE QLEDLKPHMF NRRIGEALAV  540
NTVNRLHRVP VNCLGNLLAM IRDQAPNIVT LVEQEASHNG PYFLGRFLEA LHYYSAIFDS  600
LDATFPPDSA QRAKVEQYIF APEIRNIVAC EGAERTERHE RLDKWRKVME SKGFKSVALS  660
ANAVTQSKIL LGLYSCDGYR MTEDNGCLLL GWQDRSIMAA SAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-973237031377Protein SCARECROW
5b3h_D7e-973237031377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041554.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379744.20.0DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A498J0I50.0A0A498J0I5_MALDO; Uncharacterized protein
STRINGXP_009346793.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-90RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]