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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr041508.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NF-YA | ||||||||
Protein Properties | Length: 799aa MW: 90325.3 Da PI: 8.762 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 99.8 | 2.7e-31 | 643 | 699 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl k+rkpylheSRh hA++R RgsgGrF Pbr041508.3 643 DGPIYVNAKQYHGILRRRQSRAKLEAHNKL-LKARKPYLHESRHLHAVNRVRGSGGRF 699 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01640 | 9.6E-14 | 70 | 281 | IPR017451 | F-box associated interaction domain |
Pfam | PF08268 | 6.1E-7 | 182 | 282 | IPR013187 | F-box associated domain, type 3 |
SMART | SM00521 | 4.8E-35 | 641 | 702 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.166 | 642 | 702 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.4E-27 | 645 | 699 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.0E-23 | 645 | 667 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 647 | 667 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.0E-23 | 676 | 699 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 799 aa Download sequence Send to blast |
MASSFRASST QTVFAPSYQW KITSTTPKLF RLGSYIFPTV LKPPXXXXXX XXXPYSIEAA 60 DRGLLVGVSH KNHKIPRYFV CAPTAQYWKQ IPNPKTRYFT RGTAVTVLRS SSNPVLSSWF 120 KIIRLSKPET NPSYENHSIC EVFDSNTWSW KQLNDVILPH LVFLDTKSPV SACCALYWHL 180 TNNQILAFYQ DKETWETFAL PHPMCNDVHW KYSLTAYQGR LALVRKGGDE FMEYWIMEDR 240 REKLWSERKR LSTRGTSVVA FCDSDVALVK EHGKMIFYNF KECKVSKLVE LESWHEPDYI 300 FSFPATKNPG NIADHEKILS EEFMELRVIR EHDEKIWSEN EKLLCIKTLN NDQMEMEYSF 360 RVVCNSDVAL VLETSDKKAA FCVIFKSWQR SHSLMMRRGL EASNPAQIVI ISSLAARCTG 420 YIFQPDGSVT QNNVRAVVAA RASEDGKVEK LSPLPVSGLY LFWDTTIELS IPTTQKLDKN 480 IFNQSSVAMP LYTNSMSWNP SEQVPQLLSK DVSFKAKFPP QVHHGAKHLG LQLQTDHRSS 540 SITQSIGHSQ DPSNSSDSVL LWFLPLNPGE VQTCDKDAEG NMKPVLLQSN QDFILNPSQG 600 CVPYPYVDPY FSGFLTAYGP QAMSHMVGMA PTRVLLPPDL AQDGPIYVNA KQYHGILRRR 660 QSRAKLEAHN KLLKARKPYL HESRHLHAVN RVRGSGGRFL STKQQSDQNP SSNTHHVSDS 720 INSHQKDTGG TESNHSGSSD FLPSVALHSD MTSVSNTNDN FQQPDRRFSG IPPHMTGAMQ 780 FPGGFMRAGN QHCASVVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-20 | 645 | 712 | 4 | 74 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr041508.3 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A498KFE5 | 0.0 | A0A498KFE5_MALDO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6949 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 3e-40 | nuclear factor Y, subunit A3 |