PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041407.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 587aa    MW: 64078.5 Da    PI: 6.3942
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041407.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017e-32228285260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Pbr041407.1 228 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 285
                  8****************************************.***************85 PP
2WRKY106.21.7e-33403461159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Pbr041407.1 403 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 461
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.02E-24226286IPR003657WRKY domain
SMARTSM007744.1E-34227285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-26227286IPR003657WRKY domain
PROSITE profilePS5081122.791228286IPR003657WRKY domain
PfamPF031061.7E-24228284IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37388463IPR003657WRKY domain
SuperFamilySSF1182902.35E-29395463IPR003657WRKY domain
PROSITE profilePS5081138.825398463IPR003657WRKY domain
SMARTSM007743.1E-39403462IPR003657WRKY domain
PfamPF031063.5E-26404461IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MDSIALDHPS GPSDDVDPGL TDFQPSSEPA FYSSAAASGG AKYKLMSPAK LPISRSPCLT  60
IPPGLSPTSF LESPVLLSNM KAEPSPTTGS FLKPQMLYGS LSSTTYSATT VCSDFNTSDE  120
RNSGSFEFKP HAISNMVTTD YNHYRNEQPV QVPGQAQPQS HASPTLAKNE MAVSSNELSL  180
SAPVHTGGAS APVEDDSGDL TQREHPHPGV QTSQGDNKGN GPSVISSDDG YNWRKYGQKH  240
VKGSEFPRSY YKCTHPNCEV KKLFERSHDG QITEIIYKGT HDHPKPQPTR RYNTGAMMPA  300
QEERSDKASS LTGQDDKPSS IYGQMSSNNE PNSTPELSPV TGNDDSVEGT GSLSNRLPDE  360
VDEDDQFSKR RRMDVGSIDI TPIVKPIREP RVVVQTLSEV DILDDGYRWR KYGQKVVRGN  420
PNPRSYYKCT NAGCPVRKHV ERASHDPKAV ITTYEGKHNH DVPTAKSSSH DTSGPTTVNV  480
LSRIRPEESD TISLDLGVGM TSGGEIRTNE HLQLHPDLVE RQSHTNSNFR VAQNTPVSTY  540
YGVLNGGMNQ YGSRENPSES RSIEIRPLNH SSYPYPQNMG RVLTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36228463877Probable WRKY transcription factor 4
2lex_A1e-36228463877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041407.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346774.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A498KCY00.0A0A498KCY0_MALDO; Uncharacterized protein
STRINGXP_009346774.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein