PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041329.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 574aa    MW: 62459.3 Da    PI: 6.756
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041329.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05143164223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C  Cgk F++  +L  H+r+H
  Pbr041329.1 143 VCCVCGKNFPSMKSLFGHMRSH 164
                  6********************9 PP
2zf-C2H210.70.0017400422123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C k+F+++  L  H+++H
  Pbr041329.1 400 YKCNLCVKCFPSHQALGGHMSSH 422
                  9********************99 PP
3zf-C2H214.30.00012467489123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k+F++   L  H r+H
  Pbr041329.1 467 HQCKICNKTFPTGQALGGHKRSH 489
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.2656794IPR007087Zinc finger, C2H2
SMARTSM003550.966789IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-66989IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349142169IPR007087Zinc finger, C2H2
SMARTSM003550.092142164IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.23E-8143164No hitNo description
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
PfamPF139122.7E-6144166IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-8395422No hitNo description
PfamPF139124.4E-6399423IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076400427IPR007087Zinc finger, C2H2
SMARTSM003550.034400422IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280402422IPR007087Zinc finger, C2H2
SuperFamilySSF576673.13E-5464494No hitNo description
PfamPF139124.9E-13466490IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.762467494IPR007087Zinc finger, C2H2
SMARTSM003550.0081467489IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280469489IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MDIQHKETRF PPLAARYQEP TPAKKPSREE MENNNGGLFP KLKVAKPEPL DQNPQNSSAA  60
PQPQFTRFCE VCDKGFSSGK ALGGHLRIHI QADRELFNQS RKNMISSKAK ISKPNNSDVG  120
SSNAGGVVGI GGNSNSISDM KPVCCVCGKN FPSMKSLFGH MRSHPEREWR GIQPPPAAKN  180
SSSSTLSDDV PDQSDKKAQD GQIDSDEMFF GSKSSVLDLS KTLPKCTGLE SNSDQSVSGL  240
DSRSPRTIEE DEEQMKEAVH DLLLLAQANP LEGGGADDTM CEATNSNFLI TANQDGEGAL  300
PCHGYTATAT VGSTNKRKGS PFEVKRSEKK WYHEYGGGFG QEKSTVKNFL KLGLMEEENM  360
GNHNNTEDEL SDSQNSESIA VMRRNRRKMK LVDLEGRLRY KCNLCVKCFP SHQALGGHMS  420
SHNKLKGIAV AHPSMENQSA PADVSAGEDR VHDDEAERVA LNHQQHHQCK ICNKTFPTGQ  480
ALGGHKRSHW NGPPEHQQQQ VVGGPPEQLQ QQLQAQSSQN IAGVGGGRRV LDFDLNELPP  540
IEEDDQQGEA AGYRYGGAAA ARCAPSSYNS VTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041329.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018500766.10.0PREDICTED: hypermethylated in cancer 2 protein
TrEMBLA0A498IT110.0A0A498IT11_MALDO; Uncharacterized protein
STRINGXP_009346700.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.19e-21C2H2 family protein