PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041223.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 703aa    MW: 78207.2 Da    PI: 6.4748
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041223.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.41e-1333377011374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshl 96 
                  lv+lLl+cAeav+++d  la+++L +l+  + p gd+mqR+a++fteAL+arla + +++ +  +p++ s+    s e l+++++ ++++P++kf+h+
  Pbr041223.1 337 LVHLLLACAEAVAKKDYMLARRYLHHLNRVVMPLGDSMQRVASCFTEALSARLAATLTTTPSGSAPKPFSPFPpnSFEILKIYQIVYQACPYIKFAHF 434
                  68*****************************************************887777766666655433339********************** PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      e+++etg+ L+++A +l+vpfef++ v ++ledl+++++
  Pbr041223.1 435 TANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----CIEAVKETGRCLTELALSLHVPFEFHA-VGEQLEDLKPHMF 527
                  *****************************************************....***************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  + + gEalaVn v +lhr++       ++  ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++
  Pbr041223.1 528 NRRIGEALAVNTVNRLHRVP------VNCLGNLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAP 619
                  *******************9......344557****************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ei+n+vacegaer+erhe+lekWr+ +e+ GFk+vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  Pbr041223.1 620 EIRNIVACEGAERTERHERLEKWRKVMESKGFKSVPLSANAVTQSKILLGLYSCDGYRMTEDKGCLLLGWQDRSIMAASAWR 701
                  *********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.735311681IPR005202Transcription factor GRAS
PfamPF035143.6E-131337701IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MMINTLSGSM GSVKSENSCT SDLKPPSPTE STTMSMSISE CKKTTTPPSS ELDQQSSLTP  60
PSLNFPTLKF EVDDVEVQSP DHSIWDSLFS EQFDTDFMVL SPVPNNMPNS PQNGGSATHQ  120
NYNYNYAQSM QGQSLSGCSP PRFSPHLGAF SSTHNPKGKG LSPLRRVFNS PVNQYMQPAD  180
QNMQSLPVSI EDFLDDYQRD GFIAAYPTTT SSRMSGSSSQ SYNHHDHLPA SSTVPSTTLD  240
CMPMHNSSRF SRSESEESLV TAGNSQLTQE SSRGSGYQQM GGAPLSQQLQ QERMQEKQQQ  300
PLMQPHKHHQ HQHQQNLHYN MMPPMAHEQE QDGGLQLVHL LLACAEAVAK KDYMLARRYL  360
HHLNRVVMPL GDSMQRVASC FTEALSARLA ATLTTTPSGS APKPFSPFPP NSFEILKIYQ  420
IVYQACPYIK FAHFTANQAI FEAFESEERV HVIDLDILQG YQWPAFMQAL AARPGGAPFL  480
RITGVGPCIE AVKETGRCLT ELALSLHVPF EFHAVGEQLE DLKPHMFNRR IGEALAVNTV  540
NRLHRVPVNC LGNLLAMIRD QAPNIVTLVE QEASHNGPYF LGRFLEALHY YSAIFDSLDA  600
TFPPDSAQRA KVEQYIFAPE IRNIVACEGA ERTERHERLE KWRKVMESKG FKSVPLSANA  660
VTQSKILLGL YSCDGYRMTE DKGCLLLGWQ DRSIMAASAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-9434470025377Protein SCARECROW
5b3h_D2e-9434470025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041223.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009350709.10.0PREDICTED: DELLA protein RGL1-like
RefseqXP_009378007.10.0PREDICTED: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A498HIF30.0A0A498HIF3_MALDO; Uncharacterized protein
STRINGXP_009350709.10.0(Pyrus x bretschneideri)
STRINGXP_009378007.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-95RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]