PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr041223.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRAS | ||||||||
Protein Properties | Length: 703aa MW: 78207.2 Da PI: 6.4748 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 437.4 | 1e-133 | 337 | 701 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshl 96 lv+lLl+cAeav+++d la+++L +l+ + p gd+mqR+a++fteAL+arla + +++ + +p++ s+ s e l+++++ ++++P++kf+h+ Pbr041223.1 337 LVHLLLACAEAVAKKDYMLARRYLHHLNRVVMPLGDSMQRVASCFTEALSARLAATLTTTPSGSAPKPFSPFPpnSFEILKIYQIVYQACPYIKFAHF 434 68*****************************************************887777766666655433339********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+ e+++etg+ L+++A +l+vpfef++ v ++ledl+++++ Pbr041223.1 435 TANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----CIEAVKETGRCLTELALSLHVPFEFHA-VGEQLEDLKPHMF 527 *****************************************************....***************************.7************ PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 + + gEalaVn v +lhr++ ++ ++L ++++ P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++ Pbr041223.1 528 NRRIGEALAVNTVNRLHRVP------VNCLGNLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAP 619 *******************9......344557****************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ei+n+vacegaer+erhe+lekWr+ +e+ GFk+vpls +a++q k ll ++ dgyr+ e++g+l+lgW+dr+++++SaWr Pbr041223.1 620 EIRNIVACEGAERTERHERLEKWRKVMESKGFKSVPLSANAVTQSKILLGLYSCDGYRMTEDKGCLLLGWQDRSIMAASAWR 701 *********************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.735 | 311 | 681 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.6E-131 | 337 | 701 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MMINTLSGSM GSVKSENSCT SDLKPPSPTE STTMSMSISE CKKTTTPPSS ELDQQSSLTP 60 PSLNFPTLKF EVDDVEVQSP DHSIWDSLFS EQFDTDFMVL SPVPNNMPNS PQNGGSATHQ 120 NYNYNYAQSM QGQSLSGCSP PRFSPHLGAF SSTHNPKGKG LSPLRRVFNS PVNQYMQPAD 180 QNMQSLPVSI EDFLDDYQRD GFIAAYPTTT SSRMSGSSSQ SYNHHDHLPA SSTVPSTTLD 240 CMPMHNSSRF SRSESEESLV TAGNSQLTQE SSRGSGYQQM GGAPLSQQLQ QERMQEKQQQ 300 PLMQPHKHHQ HQHQQNLHYN MMPPMAHEQE QDGGLQLVHL LLACAEAVAK KDYMLARRYL 360 HHLNRVVMPL GDSMQRVASC FTEALSARLA ATLTTTPSGS APKPFSPFPP NSFEILKIYQ 420 IVYQACPYIK FAHFTANQAI FEAFESEERV HVIDLDILQG YQWPAFMQAL AARPGGAPFL 480 RITGVGPCIE AVKETGRCLT ELALSLHVPF EFHAVGEQLE DLKPHMFNRR IGEALAVNTV 540 NRLHRVPVNC LGNLLAMIRD QAPNIVTLVE QEASHNGPYF LGRFLEALHY YSAIFDSLDA 600 TFPPDSAQRA KVEQYIFAPE IRNIVACEGA ERTERHERLE KWRKVMESKG FKSVPLSANA 660 VTQSKILLGL YSCDGYRMTE DKGCLLLGWQ DRSIMAASAW RC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-94 | 344 | 700 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-94 | 344 | 700 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr041223.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009350709.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
Refseq | XP_009378007.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
Swissprot | G7L166 | 0.0 | RAM1_MEDTR; GRAS family protein RAM1 | ||||
TrEMBL | A0A498HIF3 | 0.0 | A0A498HIF3_MALDO; Uncharacterized protein | ||||
STRING | XP_009350709.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009378007.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9470 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-95 | RGA-like 1 |
Publications ? help Back to Top | |||
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