PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041079.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 182aa    MW: 19906.4 Da    PI: 7.8292
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041079.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601482.5e-46141131100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca+dCv+apyfpa+qp+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la ++
  Pbr041079.1  14 PCAACKLLRRRCAQDCVFAPYFPADQPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLAIAQ 111
                  7**********************************************************************************************998 PP

       DUF260  99 ee 100
                  +e
  Pbr041079.1 112 AE 113
                  76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.11613114IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-4514111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEGQSGRKQG STSPCAACKL LRRRCAQDCV FAPYFPADQP QKFASVHKVF GASNVNKMLQ  60
ELPEHQRSDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DALQTQLAIA QAEVVHMRMG  120
QFPTTTTTAS TTACSPDQKM APDNPHHHHY HRSHQTATTK SFFSMDMAAD QANMGESLWS  180
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-51101227119LOB family transfactor Ramosa2.1
5ly0_B6e-51101227119LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041079.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361815.11e-135PREDICTED: LOB domain-containing protein 4
SwissprotQ9SHE92e-69LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A498IT341e-110A0A498IT34_MALDO; Uncharacterized protein
STRINGXP_009361815.11e-134(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-70LOB domain-containing protein 4